SMTL ID : 5cgx.1

CRYSTAL STRUCTURE OF Fox-4 cephamycinase mutant Y150F complexed with cefoxitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.21 Å

Oligo State

monomer

Ligands

1 x 1S7: (2R)-2-{(1S)-1-methoxy-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-5-methylidene-5,6-dihydro-2H-1,3-thiazine-4-carboxylic acid(Covalent)

1S7.1: 13 residues within 4Å: Chain A: G.64, S.65, K.68, L.120, Q.121, F.151, N.153, A.222, Y.223, F.293, G.317, S.318, T.319 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.120, A:Y.223 Hydrogen bonds: A:S.65, A:K.68, A:Q.121, A:S.318 Water bridges: A:S.318 pi-Stacking: A:Y.223

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: E.6, L.9, H.40 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.6, A:E.6, A:H.40, H2O.11 ZN.3: 2 residues within 4Å: Chain A: H.2, E.362 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.2, A:E.362, A:E.362, H2O.10 ZN.4: 3 residues within 4Å: Chain A: E.125, D.127, K.131 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.125, A:E.125, A:D.127, A:D.127, H2O.11 ZN.5: 3 residues within 4Å: Chain A: W.96, Q.133, H.161 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.161, H2O.3, H2O.11, H2O.11 ZN.6: 1 residues within 4Å: Chain A: H.186 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.186, H2O.11, H2O.11 ZN.8: 4 residues within 4Å: Chain A: A.253, H.256, E.309, Y.313 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.256, H2O.1, H2O.11, H2O.12

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 4 residues within 4Å: Chain A: H.161, F.171, L.218, E.221 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.221 Water bridges: A:F.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lefurgy, S.T. et al., FOX-4 cephamycinase: an analysis of structure and function. Antimicrob.Agents Chemother. (2015)

Release Date

2016-02-03

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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