SMTL ID : 5cgz.1 (1 other biounit)

Crystal structure of GalB, the 4-carboxy-2-hydroxymuconate hydratase, from Pseuodomonas putida KT2440

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.10, D.13, E.44, H.123 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.10, A:D.13, A:D.13, A:H.123, H2O.1 ZN.11: 4 residues within 4Å: Chain B: H.10, D.13, E.44, H.123 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.10, B:D.13, B:D.13, B:H.123, H2O.11 ZN.21: 4 residues within 4Å: Chain C: H.10, D.13, E.44, H.123 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.10, C:D.13, C:D.13, C:H.123, H2O.21 ZN.31: 4 residues within 4Å: Chain D: H.10, D.13, E.44, H.123 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.10, D:D.13, D:D.13, D:H.123, H2O.31 ZN.41: 4 residues within 4Å: Chain E: H.10, D.13, E.44, H.123 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.10, E:D.13, E:D.13, E:H.123, H2O.41 ZN.51: 4 residues within 4Å: Chain F: H.10, D.13, E.44, H.123 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.10, F:D.13, F:D.13, F:H.123, H2O.51

54 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: K.116, D.117, P.118, N.120, Y.121, P.124 Chain C: L.115, H.128, Q.131 Ligand excluded by PLIP GOL.3: 5 residues within 4Å: Chain A: W.179, D.180, Y.183, T.200, Y.224 Ligand excluded by PLIP GOL.4: 7 residues within 4Å: Chain A: M.1, K.2, S.3, A.31, R.104, V.105, Q.106 Ligand excluded by PLIP GOL.5: 8 residues within 4Å: Chain A: N.213, V.214, R.220, A.240 Chain E: A.151, P.153, R.234, V.235 Ligand excluded by PLIP GOL.6: 6 residues within 4Å: Chain A: T.176, S.177, V.178, W.179, D.180 Ligands: GOL.10 Ligand excluded by PLIP GOL.7: 5 residues within 4Å: Chain A: H.33, S.77, E.79, R.104, V.105 Ligand excluded by PLIP GOL.8: 6 residues within 4Å: Chain A: E.41, E.56, K.60, D.82, I.83, G.84 Ligand excluded by PLIP GOL.9: 5 residues within 4Å: Chain A: K.2, Y.30, E.108 Chain E: N.238, A.240 Ligand excluded by PLIP GOL.10: 4 residues within 4Å: Chain A: T.176, S.177, N.221 Ligands: GOL.6 Ligand excluded by PLIP GOL.12: 9 residues within 4Å: Chain A: L.115, H.128, Q.131 Chain B: K.116, D.117, P.118, N.120, Y.121, P.124 Ligand excluded by PLIP GOL.13: 5 residues within 4Å: Chain B: W.179, D.180, Y.183, T.200, Y.224 Ligand excluded by PLIP GOL.14: 7 residues within 4Å: Chain B: M.1, K.2, S.3, A.31, R.104, V.105, Q.106 Ligand excluded by PLIP GOL.15: 8 residues within 4Å: Chain B: N.213, V.214, R.220, A.240 Chain D: A.151, P.153, R.234, V.235 Ligand excluded by PLIP GOL.16: 6 residues within 4Å: Chain B: T.176, S.177, V.178, W.179, D.180 Ligands: GOL.20 Ligand excluded by PLIP GOL.17: 5 residues within 4Å: Chain B: H.33, S.77, E.79, R.104, V.105 Ligand excluded by PLIP GOL.18: 6 residues within 4Å: Chain B: E.41, E.56, K.60, D.82, I.83, G.84 Ligand excluded by PLIP GOL.19: 5 residues within 4Å: Chain B: K.2, Y.30, E.108 Chain D: N.238, A.240 Ligand excluded by PLIP GOL.20: 4 residues within 4Å: Chain B: T.176, S.177, N.221 Ligands: GOL.16 Ligand excluded by PLIP GOL.22: 9 residues within 4Å: Chain B: L.115, H.128, Q.131 Chain C: K.116, D.117, P.118, N.120, Y.121, P.124 Ligand excluded by PLIP GOL.23: 5 residues within 4Å: Chain C: W.179, D.180, Y.183, T.200, Y.224 Ligand excluded by PLIP GOL.24: 7 residues within 4Å: Chain C: M.1, K.2, S.3, A.31, R.104, V.105, Q.106 Ligand excluded by PLIP GOL.25: 8 residues within 4Å: Chain C: N.213, V.214, R.220, A.240 Chain F: A.151, P.153, R.234, V.235 Ligand excluded by PLIP GOL.26: 6 residues within 4Å: Chain C: T.176, S.177, V.178, W.179, D.180 Ligands: GOL.30 Ligand excluded by PLIP GOL.27: 5 residues within 4Å: Chain C: H.33, S.77, E.79, R.104, V.105 Ligand excluded by PLIP GOL.28: 6 residues within 4Å: Chain C: E.41, E.56, K.60, D.82, I.83, G.84 Ligand excluded by PLIP GOL.29: 5 residues within 4Å: Chain C: K.2, Y.30, E.108 Chain F: N.238, A.240 Ligand excluded by PLIP GOL.30: 4 residues within 4Å: Chain C: T.176, S.177, N.221 Ligands: GOL.26 Ligand excluded by PLIP GOL.32: 9 residues within 4Å: Chain D: K.116, D.117, P.118, N.120, Y.121, P.124 Chain F: L.115, H.128, Q.131 Ligand excluded by PLIP GOL.33: 5 residues within 4Å: Chain D: W.179, D.180, Y.183, T.200, Y.224 Ligand excluded by PLIP GOL.34: 7 residues within 4Å: Chain D: M.1, K.2, S.3, A.31, R.104, V.105, Q.106 Ligand excluded by PLIP GOL.35: 8 residues within 4Å: Chain B: A.151, P.153, R.234, V.235 Chain D: N.213, V.214, R.220, A.240 Ligand excluded by PLIP GOL.36: 6 residues within 4Å: Chain D: T.176, S.177, V.178, W.179, D.180 Ligands: GOL.40 Ligand excluded by PLIP GOL.37: 5 residues within 4Å: Chain D: H.33, S.77, E.79, R.104, V.105 Ligand excluded by PLIP GOL.38: 6 residues within 4Å: Chain D: E.41, E.56, K.60, D.82, I.83, G.84 Ligand excluded by PLIP GOL.39: 5 residues within 4Å: Chain B: N.238, A.240 Chain D: K.2, Y.30, E.108 Ligand excluded by PLIP GOL.40: 4 residues within 4Å: Chain D: T.176, S.177, N.221 Ligands: GOL.36 Ligand excluded by PLIP GOL.42: 9 residues within 4Å: Chain D: L.115, H.128, Q.131 Chain E: K.116, D.117, P.118, N.120, Y.121, P.124 Ligand excluded by PLIP GOL.43: 5 residues within 4Å: Chain E: W.179, D.180, Y.183, T.200, Y.224 Ligand excluded by PLIP GOL.44: 7 residues within 4Å: Chain E: M.1, K.2, S.3, A.31, R.104, V.105, Q.106 Ligand excluded by PLIP GOL.45: 8 residues within 4Å: Chain A: A.151, P.153, R.234, V.235 Chain E: N.213, V.214, R.220, A.240 Ligand excluded by PLIP GOL.46: 6 residues within 4Å: Chain E: T.176, S.177, V.178, W.179, D.180 Ligands: GOL.50 Ligand excluded by PLIP GOL.47: 5 residues within 4Å: Chain E: H.33, S.77, E.79, R.104, V.105 Ligand excluded by PLIP GOL.48: 6 residues within 4Å: Chain E: E.41, E.56, K.60, D.82, I.83, G.84 Ligand excluded by PLIP GOL.49: 5 residues within 4Å: Chain A: N.238, A.240 Chain E: K.2, Y.30, E.108 Ligand excluded by PLIP GOL.50: 4 residues within 4Å: Chain E: T.176, S.177, N.221 Ligands: GOL.46 Ligand excluded by PLIP GOL.52: 9 residues within 4Å: Chain E: L.115, H.128, Q.131 Chain F: K.116, D.117, P.118, N.120, Y.121, P.124 Ligand excluded by PLIP GOL.53: 5 residues within 4Å: Chain F: W.179, D.180, Y.183, T.200, Y.224 Ligand excluded by PLIP GOL.54: 7 residues within 4Å: Chain F: M.1, K.2, S.3, A.31, R.104, V.105, Q.106 Ligand excluded by PLIP GOL.55: 8 residues within 4Å: Chain C: A.151, P.153, R.234, V.235 Chain F: N.213, V.214, R.220, A.240 Ligand excluded by PLIP GOL.56: 6 residues within 4Å: Chain F: T.176, S.177, V.178, W.179, D.180 Ligands: GOL.60 Ligand excluded by PLIP GOL.57: 5 residues within 4Å: Chain F: H.33, S.77, E.79, R.104, V.105 Ligand excluded by PLIP GOL.58: 6 residues within 4Å: Chain F: E.41, E.56, K.60, D.82, I.83, G.84 Ligand excluded by PLIP GOL.59: 5 residues within 4Å: Chain C: N.238, A.240 Chain F: K.2, Y.30, E.108 Ligand excluded by PLIP GOL.60: 4 residues within 4Å: Chain F: T.176, S.177, N.221 Ligands: GOL.56 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mazurkewich, S. et al., Structural and Kinetic Characterization of the 4-Carboxy-2-hydroxymuconate Hydratase from the Gallate and Protocatechuate 4,5-Cleavage Pathways of Pseudomonas putida KT2440. J.Biol.Chem. (2016)

Release Date

2016-02-17

Peptides

4-oxalmesaconate hydratase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

4-oxalmesaconate hydratase

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