- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x 55R: 2-[2-(4-oxocyclohexa-2,5-dien-1-ylidene)hydrazinyl]benzoic acid(Non-covalent)
55R.2: 14 residues within 4Å:- Chain A: N.12, S.16, Y.33, T.35, V.37, T.38, W.70, S.73, T.77, F.79, W.97, L.99, N.118
- Chain B: W.110
16 PLIP interactions:15 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:V.37, A:T.38, A:T.77, A:F.79, A:L.99, B:W.110
- Hydrogen bonds: A:N.12, A:S.16, A:T.35, A:S.73, A:T.77
- Water bridges: A:S.75
- pi-Stacking: A:W.70, A:W.70, A:W.97, A:W.97
55R.4: 14 residues within 4Å:- Chain A: W.110
- Chain B: N.12, S.16, Y.33, T.35, V.37, T.38, W.70, S.73, T.77, F.79, W.97, L.99, N.118
16 PLIP interactions:15 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:V.37, B:T.38, B:T.77, B:F.79, B:L.99, A:W.110
- Hydrogen bonds: B:N.12, B:S.16, B:T.35, B:S.73, B:T.77
- Water bridges: B:S.75
- pi-Stacking: B:W.70, B:W.70, B:W.97, B:W.97
55R.6: 14 residues within 4Å:- Chain C: N.12, S.16, Y.33, T.35, V.37, T.38, W.70, S.73, T.77, F.79, W.97, L.99, N.118
- Chain D: W.110
15 PLIP interactions:14 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:V.37, C:T.38, C:T.77, C:F.79, C:L.99, D:W.110
- Hydrogen bonds: C:N.12, C:S.16, C:Y.33, C:S.73
- Water bridges: C:S.75
- pi-Stacking: C:W.70, C:W.70, C:W.97, C:W.97
55R.8: 14 residues within 4Å:- Chain C: W.110
- Chain D: N.12, S.16, Y.33, T.35, V.37, T.38, W.70, S.73, T.77, F.79, W.97, L.99, N.118
15 PLIP interactions:14 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:V.37, D:T.38, D:T.77, D:F.79, D:L.99, C:W.110
- Hydrogen bonds: D:N.12, D:S.16, D:Y.33, D:S.73
- Water bridges: D:S.75
- pi-Stacking: D:W.70, D:W.70, D:W.97, D:W.97
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Strzelczyk, P. et al., Crystal structure and ligand affinity of avidin in the complex with 4-hydroxyazobenzene-2-carboxylic acid. J.Mol.Struct. (2016)
- Release Date
- 2016-03-23
- Peptides
- Avidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x 55R: 2-[2-(4-oxocyclohexa-2,5-dien-1-ylidene)hydrazinyl]benzoic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Strzelczyk, P. et al., Crystal structure and ligand affinity of avidin in the complex with 4-hydroxyazobenzene-2-carboxylic acid. J.Mol.Struct. (2016)
- Release Date
- 2016-03-23
- Peptides
- Avidin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A