SMTL ID : 5chz.1

Structure of wild-type human MBD4 bound to a G:T mismatch

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x DC- DC- DA- DG- DC- DG- DT: 7-mer DNA(Non-covalent)

DC-DC-DA-DG-DC-DG-DT.1: 18 residues within 4Å: Chain A: L.59, V.60, Q.61, L.78, R.80, T.81, S.82, G.83, Y.152, D.172, K.174 Chain B: G.6, C.7, G.8, C.9, T.10, G.11, G.12 Protein-ligand interaction information (PLIP) not available

1 x DG- DC- DA- DG- DC: 5-mer DNA(Non-covalent)

DG-DC-DA-DG-DC.2: 18 residues within 4Å: Chain A: N.79, R.80, L.123, L.146, H.147, G.148, I.149, G.150, K.151, Y.152, G.153, D.172 Chain B: G.1, C.2, T.3, G.4, C.5 Ligands: MG.3 Protein-ligand interaction information (PLIP) not available

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: I.144, L.146, I.149 Ligands: DG-DC-DA-DG-DC.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:I.144, A:L.146, A:I.149, H2O.6, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ouzon-Shubeita, H. et al., Structure of wild-type human MBD4 bound to a G:T mismatch. To Be Published

Release Date

2016-07-20

Peptides

Methyl-CpG-binding domain protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methyl-CpG-binding domain protein 4