SMTL ID : 5cik.1

Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 12 residues within 4Å: Chain A: P.233, H.234, H.327, R.328, G.330, H.331, H.338, E.360, M.362, R.372 Chain B: R.72, F.91 14 PLIP interactions: 10 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:H.327, B:R.72, B:R.72 Salt bridges: A:H.234, A:H.234, A:H.327, A:R.328, A:H.331, A:H.331, A:H.338, A:H.338, A:R.372, B:R.72, B:R.72 CIT.4: 11 residues within 4Å: Chain A: R.72, F.91 Chain B: P.233, H.327, R.328, G.330, H.331, H.338, E.360, M.362, R.372 14 PLIP interactions: 11 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:E.360 Water bridges: B:E.360, B:E.360 Salt bridges: B:H.327, B:H.327, B:R.328, B:H.331, B:H.331, B:H.338, B:H.338, B:R.372, A:R.72, A:R.72 Hydrophobic interactions: A:F.91

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: T.380, T.382, A.384, Q.385 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.380, A:T.382, A:Q.385 GOL.3: 4 residues within 4Å: Chain A: R.40, E.81, G.82, D.83 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.40, A:G.82 Water bridges: A:E.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition. To Be Published

Release Date

2016-07-20

Peptides

Proline dipeptidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Proline dipeptidase

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