SMTL ID : 5cj2.2 (7 other biounits)

Ran GDP Y39A mutant triclinic crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: D.18, G.19, G.20, T.21, G.22, K.23, T.24, T.25, E.70, N.122, K.123, D.125, I.126, S.150, A.151, K.152 Ligands: MG.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.18, A:G.20, A:T.21, A:G.22, A:K.23, A:T.24, A:T.25, A:T.25, A:E.70, A:E.70, A:N.122, A:K.123, A:K.123, A:A.151, A:K.152, A:K.152 Salt bridges: A:K.23, A:D.125 pi-Cation interactions: A:K.152

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 2 residues within 4Å: Chain A: T.24 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.24, H2O.1, H2O.2, H2O.2, H2O.2 MG.3: 3 residues within 4Å: Chain A: R.166, E.175 Ligands: PO4.4 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.175, H2O.2, H2O.3 MG.5: 1 residues within 4Å: Ligands: PO4.4 No protein-ligand interaction detected (PLIP)

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: R.166, E.175 Ligands: MG.3, MG.5 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.166, A:R.166 Salt bridges: A:R.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudack, T. et al., Catalysis of GTP Hydrolysis by Small GTPases at Atomic Detail by Integration of X-ray Crystallography, Experimental, and Theoretical IR Spectroscopy. J.Biol.Chem. (2015)

Release Date

2015-09-09

Peptides

GTP-binding nuclear protein Ran: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

GTP-binding nuclear protein Ran

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