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SMTL ID : 5cks.1
DAHP (3-deoxy-D-arabinoheptulosonate-7-phosphate) Synthase in complex with DAHP Oxime.
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.12 Å
Oligo State
homo-tetramer
Ligands
3 x
GAL
:
beta-D-galactopyranose
(Non-covalent)
GAL.1:
11 residues within 4Å:
Chain A:
E.97
,
K.106
,
I.109
,
N.110
,
D.147
,
T.150
Chain B:
Q.171
,
V.172
,
E.175
,
F.210
,
L.211
6
PLIP interactions
:
3 interactions with chain B
,
3 interactions with chain A
Hydrogen bonds:
B:Q.171
,
B:E.175
,
B:L.211
,
A:N.110
Water bridges:
A:E.97
Salt bridges:
A:K.106
GAL.2:
3 residues within 4Å:
Chain B:
K.71
,
K.129
,
D.133
6
PLIP interactions
:
6 interactions with chain B
Hydrogen bonds:
B:K.71
,
B:K.71
,
B:K.129
,
B:K.129
Water bridges:
B:K.71
,
B:D.133
GAL.4:
10 residues within 4Å:
Chain C:
Q.171
,
V.172
,
E.175
,
F.210
,
L.211
Chain D:
E.97
,
I.109
,
N.110
,
D.147
,
T.150
8
PLIP interactions
:
3 interactions with chain D
,
5 interactions with chain C
Hydrogen bonds:
D:N.110
,
D:T.150
,
C:Q.171
,
C:Q.171
,
C:E.175
,
C:L.211
Water bridges:
D:D.147
,
C:L.211
2 x
52L
:
DAHP Oxime
(Non-covalent)
52L.3:
11 residues within 4Å:
Chain B:
C.62
,
R.93
,
Y.95
,
K.98
,
P.99
,
R.100
,
T.101
,
R.166
,
K.187
,
H.269
,
D.327
19
PLIP interactions
:
19 interactions with chain B
Hydrophobic interactions:
B:P.99
Hydrogen bonds:
B:K.98
,
B:P.99
,
B:T.101
,
B:T.101
,
B:T.101
,
B:T.101
,
B:R.166
,
B:D.327
,
B:D.327
Water bridges:
B:R.93
,
B:T.102
,
B:E.144
,
B:R.166
Salt bridges:
B:R.93
,
B:K.98
,
B:R.100
,
B:K.187
,
B:H.269
52L.5:
12 residues within 4Å:
Chain C:
C.62
,
R.93
,
Y.95
,
K.98
,
P.99
,
R.100
,
T.101
,
E.144
,
R.166
,
K.187
,
H.269
,
D.327
20
PLIP interactions
:
20 interactions with chain C
Hydrophobic interactions:
C:P.99
Hydrogen bonds:
C:K.98
,
C:P.99
,
C:T.101
,
C:T.101
,
C:E.144
,
C:R.166
,
C:D.327
,
C:D.327
Water bridges:
C:R.93
,
C:Y.95
,
C:T.102
,
C:R.166
,
C:R.166
,
C:K.187
Salt bridges:
C:R.93
,
C:K.98
,
C:R.100
,
C:K.187
,
C:H.269
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Balachandran, N. et al., Potent Inhibition of 3-Deoxy-d-arabinoheptulosonate-7-phosphate (DAHP) Synthase by DAHP Oxime, a Phosphate Group Mimic. Biochemistry (2016)
Release Date
2016-08-10
Peptides
Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive:
A
B
C
D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
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Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive
Toggle Identical (BD)
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|
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|
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|
8e0u.1
|
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|
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|
8e0y.1
|
8e0z.1
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