SMTL ID : 5cks.1

DAHP (3-deoxy-D-arabinoheptulosonate-7-phosphate) Synthase in complex with DAHP Oxime.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-tetramer

Ligands

3 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.1: 11 residues within 4Å: Chain A: E.97, K.106, I.109, N.110, D.147, T.150 Chain B: Q.171, V.172, E.175, F.210, L.211 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.171, B:E.175, B:L.211, A:N.110 Water bridges: A:E.97 Salt bridges: A:K.106 GAL.2: 3 residues within 4Å: Chain B: K.71, K.129, D.133 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.71, B:K.71, B:K.129, B:K.129 Water bridges: B:K.71, B:D.133 GAL.4: 10 residues within 4Å: Chain C: Q.171, V.172, E.175, F.210, L.211 Chain D: E.97, I.109, N.110, D.147, T.150 8 PLIP interactions: 3 interactions with chain D, 5 interactions with chain C Hydrogen bonds: D:N.110, D:T.150, C:Q.171, C:Q.171, C:E.175, C:L.211 Water bridges: D:D.147, C:L.211

2 x 52L: DAHP Oxime(Non-covalent)

52L.3: 11 residues within 4Å: Chain B: C.62, R.93, Y.95, K.98, P.99, R.100, T.101, R.166, K.187, H.269, D.327 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:P.99 Hydrogen bonds: B:K.98, B:P.99, B:T.101, B:T.101, B:T.101, B:T.101, B:R.166, B:D.327, B:D.327 Water bridges: B:R.93, B:T.102, B:E.144, B:R.166 Salt bridges: B:R.93, B:K.98, B:R.100, B:K.187, B:H.269 52L.5: 12 residues within 4Å: Chain C: C.62, R.93, Y.95, K.98, P.99, R.100, T.101, E.144, R.166, K.187, H.269, D.327 20 PLIP interactions: 20 interactions with chain C Hydrophobic interactions: C:P.99 Hydrogen bonds: C:K.98, C:P.99, C:T.101, C:T.101, C:E.144, C:R.166, C:D.327, C:D.327 Water bridges: C:R.93, C:Y.95, C:T.102, C:R.166, C:R.166, C:K.187 Salt bridges: C:R.93, C:K.98, C:R.100, C:K.187, C:H.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balachandran, N. et al., Potent Inhibition of 3-Deoxy-d-arabinoheptulosonate-7-phosphate (DAHP) Synthase by DAHP Oxime, a Phosphate Group Mimic. Biochemistry (2016)

Release Date

2016-08-10

Peptides

Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive

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