SMTL ID : 5cll.1 (1 other biounit)

Truncated Ran wild type in complex with GDP-BeF and RanBD1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 23 residues within 4Å: Chain A: D.18, G.19, G.20, T.21, G.22, K.23, T.24, T.25, F.35, E.36, K.37, K.38, Y.39, V.40, N.122, K.123, D.125, I.126, S.150, A.151, K.152 Ligands: BEF.2, MG.3 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:G.20, A:T.21, A:G.22, A:K.23, A:T.24, A:T.25, A:T.25, A:E.36, A:N.122, A:K.123, A:K.123, A:A.151, A:K.152 Water bridges: A:K.23, A:T.42, A:T.42, A:D.65 Salt bridges: A:K.23, A:D.125 pi-Stacking: A:F.35, A:F.35

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 12 residues within 4Å: Chain A: G.19, K.23, T.24, Y.39, A.41, T.42, T.66, A.67, G.68, Q.69 Ligands: GDP.1, MG.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: T.24, T.42, D.65 Ligands: GDP.1, BEF.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.24, A:T.42, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudack, T. et al., Catalysis of GTP Hydrolysis by Small GTPases at Atomic Detail by Integration of X-ray Crystallography, Experimental, and Theoretical IR Spectroscopy. J.Biol.Chem. (2015)

Release Date

2015-09-09

Peptides

GTP-binding nuclear protein Ran: A
E3 SUMO-protein ligase RanBP2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GTP-binding nuclear protein Ran

E3 SUMO-protein ligase RanBP2

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