SMTL ID : 5cm6.1

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM PSEUDOALTEROMONAS ATLANTICA T6c(Patl_2292, TARGET EFI-510180) WITH BOUND SODIUM AND PYRUVATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

2 x PYR: PYRUVIC ACID(Non-covalent)

PYR.1: 15 residues within 4Å: Chain A: W.37, F.44, A.94, Y.96, Y.97, Q.153, R.174, P.176, E.211, W.212, V.213, E.236, T.239, L.241 Ligands: NA.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.44, A:T.239, A:L.241 Hydrogen bonds: A:Q.153, A:W.212 Salt bridges: A:R.174 PYR.3: 15 residues within 4Å: Chain B: W.37, F.44, A.94, Y.96, Y.97, Q.153, R.174, P.176, E.211, W.212, V.213, E.236, T.239, L.241 Ligands: NA.4 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:T.239, B:L.241 Hydrogen bonds: B:Y.97, B:Q.153, B:W.212 Salt bridges: B:R.174

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 8 residues within 4Å: Chain A: Y.96, Q.153, R.174, E.211, W.212, V.213, E.236 Ligands: PYR.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.153, A:E.211 NA.4: 8 residues within 4Å: Chain B: Y.96, Q.153, R.174, E.211, W.212, V.213, E.236 Ligands: PYR.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.153, B:E.211 Water bridges: B:Q.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yadava, U. et al., CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM PSEUDOALTEROMONAS ATLANTICA T6c(Patl_2292, TARGET EFI-510180) WITH BOUND SODIUM AND PYRUVATE. To be published

Release Date

2015-07-29

Peptides

TRAP dicarboxylate transporter-DctP subunit: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TRAP dicarboxylate transporter-DctP subunit