- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x CA: CALCIUM ION(Non-covalent)
CA.2: 3 residues within 4Å:- Chain A: D.126
- Ligands: MG.3, TPP.9
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.126, A:D.126, H2O.2, H2O.5, H2O.22
CA.6: 6 residues within 4Å:- Chain A: D.51, D.79
- Ligands: TPP.5, MG.8, ADP.13, MG.15
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.51, A:D.51, A:D.79, H2O.3, H2O.8
CA.7: 2 residues within 4Å:- Chain A: D.209
- Ligands: TPP.5
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.209, A:D.209, H2O.2, H2O.18, H2O.20
CA.10: 6 residues within 4Å:- Chain B: D.51, D.79
- Ligands: ADP.1, MG.3, TPP.9, MG.12
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.51, B:D.51, B:D.79, H2O.20, H2O.24
CA.11: 3 residues within 4Å:- Chain B: D.209
- Ligands: ADP.1, TPP.9
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.209, B:D.209, H2O.2, H2O.4, H2O.18
CA.14: 3 residues within 4Å:- Chain B: D.126
- Ligands: TPP.5, MG.15
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.126, B:D.126, H2O.8, H2O.18, H2O.23
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 7 residues within 4Å:- Chain A: D.126
- Chain B: D.51
- Ligands: ADP.1, CA.2, TPP.9, CA.10, NA.16
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: A:D.126, B:D.51, H2O.4
MG.8: 6 residues within 4Å:- Chain A: D.79, R.151, D.206
- Chain B: D.34
- Ligands: CA.6, ADP.13
5 PLIP interactions:2 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: A:D.79, A:D.206, B:D.34, H2O.6, H2O.8
MG.12: 6 residues within 4Å:- Chain A: D.34
- Chain B: D.79, R.151, D.206
- Ligands: ADP.1, CA.10
5 PLIP interactions:1 interactions with chain A, 2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: A:D.34, B:D.79, B:D.206, H2O.21, H2O.24
MG.15: 7 residues within 4Å:- Chain A: D.51
- Chain B: D.126
- Ligands: NA.4, TPP.5, CA.6, ADP.13, CA.14
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: A:D.51, B:D.126, H2O.20
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.4: 6 residues within 4Å:- Chain A: A.50, D.51, D.79
- Chain B: G.125
- Ligands: ADP.13, MG.15
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:A.50, B:G.125
NA.16: 6 residues within 4Å:- Chain A: G.125
- Chain B: A.50, D.51, D.79
- Ligands: ADP.1, MG.3
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.50, B:A.50, B:D.79
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.5: 21 residues within 4Å:- Chain A: D.51, G.56, R.57, H.58, F.59, P.60, L.173, L.184, S.208, D.209, G.254, D.256, Y.258, Y.309, H.311
- Chain B: D.126
- Ligands: CA.6, CA.7, ADP.13, CA.14, MG.15
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:L.173, A:Y.309, A:Y.309
- Hydrogen bonds: A:D.51, A:S.208, A:S.208, A:D.256, A:Y.258
- Water bridges: A:T.52, A:K.71
- Salt bridges: A:H.58, A:H.311
- pi-Stacking: A:Y.309
TPP.9: 21 residues within 4Å:- Chain A: D.126
- Chain B: D.51, G.56, R.57, H.58, F.59, P.60, L.173, L.184, S.208, D.209, G.254, D.256, Y.258, Y.309, H.311
- Ligands: ADP.1, CA.2, MG.3, CA.10, CA.11
13 PLIP interactions:12 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:L.173, B:Y.309, B:Y.309
- Hydrogen bonds: B:S.208, B:D.209, B:D.256, B:Y.258
- Water bridges: B:T.52, B:K.71, A:T.127
- Salt bridges: B:H.58, B:H.311
- pi-Stacking: B:Y.309
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sullivan, A.H. et al., Crystal structures of thiamine monophosphate kinase from Acinetobacter baumannii in complex with substrates and products. Sci Rep (2019)
- Release Date
- 2015-08-26
- Peptides
- Thiamine-monophosphate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x CA: CALCIUM ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sullivan, A.H. et al., Crystal structures of thiamine monophosphate kinase from Acinetobacter baumannii in complex with substrates and products. Sci Rep (2019)
- Release Date
- 2015-08-26
- Peptides
- Thiamine-monophosphate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B