- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.79 Å
- Oligo State
- homo-24-mer
- Ligands
- 48 x ZN: ZINC ION(Non-covalent)
- 72 x NA: SODIUM ION(Non-functional Binders)
NA.3: 11 residues within 4Å:- Chain A: D.131, E.134
- Chain E: D.131, E.134
- Chain I: D.131, E.134
- Ligands: NA.4, NA.27, NA.28, NA.51, NA.52
Ligand excluded by PLIPNA.4: 8 residues within 4Å:- Chain A: E.134
- Chain E: E.134
- Chain I: E.134
- Ligands: NA.3, NA.27, NA.28, NA.51, NA.52
Ligand excluded by PLIPNA.5: 5 residues within 4Å:- Chain A: E.62, H.65, E.107, Q.141
- Ligands: ZN.1
Ligand excluded by PLIPNA.9: 11 residues within 4Å:- Chain B: D.131, E.134
- Chain G: D.131, E.134
- Chain L: D.131, E.134
- Ligands: NA.10, NA.39, NA.40, NA.69, NA.70
Ligand excluded by PLIPNA.10: 8 residues within 4Å:- Chain B: E.134
- Chain G: E.134
- Chain L: E.134
- Ligands: NA.9, NA.39, NA.40, NA.69, NA.70
Ligand excluded by PLIPNA.11: 5 residues within 4Å:- Chain B: E.62, H.65, E.107, Q.141
- Ligands: ZN.7
Ligand excluded by PLIPNA.15: 11 residues within 4Å:- Chain C: D.131, E.134
- Chain H: D.131, E.134
- Chain J: D.131, E.134
- Ligands: NA.16, NA.45, NA.46, NA.57, NA.58
Ligand excluded by PLIPNA.16: 8 residues within 4Å:- Chain C: E.134
- Chain H: E.134
- Chain J: E.134
- Ligands: NA.15, NA.45, NA.46, NA.57, NA.58
Ligand excluded by PLIPNA.17: 5 residues within 4Å:- Chain C: E.62, H.65, E.107, Q.141
- Ligands: ZN.13
Ligand excluded by PLIPNA.21: 11 residues within 4Å:- Chain D: D.131, E.134
- Chain F: D.131, E.134
- Chain K: D.131, E.134
- Ligands: NA.22, NA.33, NA.34, NA.63, NA.64
Ligand excluded by PLIPNA.22: 8 residues within 4Å:- Chain D: E.134
- Chain F: E.134
- Chain K: E.134
- Ligands: NA.21, NA.33, NA.34, NA.63, NA.64
Ligand excluded by PLIPNA.23: 5 residues within 4Å:- Chain D: E.62, H.65, E.107, Q.141
- Ligands: ZN.19
Ligand excluded by PLIPNA.27: 11 residues within 4Å:- Chain A: D.131, E.134
- Chain E: D.131, E.134
- Chain I: D.131, E.134
- Ligands: NA.3, NA.4, NA.28, NA.51, NA.52
Ligand excluded by PLIPNA.28: 8 residues within 4Å:- Chain A: E.134
- Chain E: E.134
- Chain I: E.134
- Ligands: NA.3, NA.4, NA.27, NA.51, NA.52
Ligand excluded by PLIPNA.29: 5 residues within 4Å:- Chain E: E.62, H.65, E.107, Q.141
- Ligands: ZN.25
Ligand excluded by PLIPNA.33: 11 residues within 4Å:- Chain D: D.131, E.134
- Chain F: D.131, E.134
- Chain K: D.131, E.134
- Ligands: NA.21, NA.22, NA.34, NA.63, NA.64
Ligand excluded by PLIPNA.34: 8 residues within 4Å:- Chain D: E.134
- Chain F: E.134
- Chain K: E.134
- Ligands: NA.21, NA.22, NA.33, NA.63, NA.64
Ligand excluded by PLIPNA.35: 5 residues within 4Å:- Chain F: E.62, H.65, E.107, Q.141
- Ligands: ZN.31
Ligand excluded by PLIPNA.39: 11 residues within 4Å:- Chain B: D.131, E.134
- Chain G: D.131, E.134
- Chain L: D.131, E.134
- Ligands: NA.9, NA.10, NA.40, NA.69, NA.70
Ligand excluded by PLIPNA.40: 8 residues within 4Å:- Chain B: E.134
- Chain G: E.134
- Chain L: E.134
- Ligands: NA.9, NA.10, NA.39, NA.69, NA.70
Ligand excluded by PLIPNA.41: 5 residues within 4Å:- Chain G: E.62, H.65, E.107, Q.141
- Ligands: ZN.37
Ligand excluded by PLIPNA.45: 11 residues within 4Å:- Chain C: D.131, E.134
- Chain H: D.131, E.134
- Chain J: D.131, E.134
- Ligands: NA.15, NA.16, NA.46, NA.57, NA.58
Ligand excluded by PLIPNA.46: 8 residues within 4Å:- Chain C: E.134
- Chain H: E.134
- Chain J: E.134
- Ligands: NA.15, NA.16, NA.45, NA.57, NA.58
Ligand excluded by PLIPNA.47: 5 residues within 4Å:- Chain H: E.62, H.65, E.107, Q.141
- Ligands: ZN.43
Ligand excluded by PLIPNA.51: 11 residues within 4Å:- Chain A: D.131, E.134
- Chain E: D.131, E.134
- Chain I: D.131, E.134
- Ligands: NA.3, NA.4, NA.27, NA.28, NA.52
Ligand excluded by PLIPNA.52: 8 residues within 4Å:- Chain A: E.134
- Chain E: E.134
- Chain I: E.134
- Ligands: NA.3, NA.4, NA.27, NA.28, NA.51
Ligand excluded by PLIPNA.53: 5 residues within 4Å:- Chain I: E.62, H.65, E.107, Q.141
- Ligands: ZN.49
Ligand excluded by PLIPNA.57: 11 residues within 4Å:- Chain C: D.131, E.134
- Chain H: D.131, E.134
- Chain J: D.131, E.134
- Ligands: NA.15, NA.16, NA.45, NA.46, NA.58
Ligand excluded by PLIPNA.58: 8 residues within 4Å:- Chain C: E.134
- Chain H: E.134
- Chain J: E.134
- Ligands: NA.15, NA.16, NA.45, NA.46, NA.57
Ligand excluded by PLIPNA.59: 5 residues within 4Å:- Chain J: E.62, H.65, E.107, Q.141
- Ligands: ZN.55
Ligand excluded by PLIPNA.63: 11 residues within 4Å:- Chain D: D.131, E.134
- Chain F: D.131, E.134
- Chain K: D.131, E.134
- Ligands: NA.21, NA.22, NA.33, NA.34, NA.64
Ligand excluded by PLIPNA.64: 8 residues within 4Å:- Chain D: E.134
- Chain F: E.134
- Chain K: E.134
- Ligands: NA.21, NA.22, NA.33, NA.34, NA.63
Ligand excluded by PLIPNA.65: 5 residues within 4Å:- Chain K: E.62, H.65, E.107, Q.141
- Ligands: ZN.61
Ligand excluded by PLIPNA.69: 11 residues within 4Å:- Chain B: D.131, E.134
- Chain G: D.131, E.134
- Chain L: D.131, E.134
- Ligands: NA.9, NA.10, NA.39, NA.40, NA.70
Ligand excluded by PLIPNA.70: 8 residues within 4Å:- Chain B: E.134
- Chain G: E.134
- Chain L: E.134
- Ligands: NA.9, NA.10, NA.39, NA.40, NA.69
Ligand excluded by PLIPNA.71: 5 residues within 4Å:- Chain L: E.62, H.65, E.107, Q.141
- Ligands: ZN.67
Ligand excluded by PLIPNA.75: 11 residues within 4Å:- Chain M: D.131, E.134
- Chain Q: D.131, E.134
- Chain U: D.131, E.134
- Ligands: NA.76, NA.99, NA.100, NA.123, NA.124
Ligand excluded by PLIPNA.76: 8 residues within 4Å:- Chain M: E.134
- Chain Q: E.134
- Chain U: E.134
- Ligands: NA.75, NA.99, NA.100, NA.123, NA.124
Ligand excluded by PLIPNA.77: 5 residues within 4Å:- Chain M: E.62, H.65, E.107, Q.141
- Ligands: ZN.73
Ligand excluded by PLIPNA.81: 11 residues within 4Å:- Chain N: D.131, E.134
- Chain S: D.131, E.134
- Chain X: D.131, E.134
- Ligands: NA.82, NA.111, NA.112, NA.141, NA.142
Ligand excluded by PLIPNA.82: 8 residues within 4Å:- Chain N: E.134
- Chain S: E.134
- Chain X: E.134
- Ligands: NA.81, NA.111, NA.112, NA.141, NA.142
Ligand excluded by PLIPNA.83: 5 residues within 4Å:- Chain N: E.62, H.65, E.107, Q.141
- Ligands: ZN.79
Ligand excluded by PLIPNA.87: 11 residues within 4Å:- Chain O: D.131, E.134
- Chain T: D.131, E.134
- Chain V: D.131, E.134
- Ligands: NA.88, NA.117, NA.118, NA.129, NA.130
Ligand excluded by PLIPNA.88: 8 residues within 4Å:- Chain O: E.134
- Chain T: E.134
- Chain V: E.134
- Ligands: NA.87, NA.117, NA.118, NA.129, NA.130
Ligand excluded by PLIPNA.89: 5 residues within 4Å:- Chain O: E.62, H.65, E.107, Q.141
- Ligands: ZN.85
Ligand excluded by PLIPNA.93: 11 residues within 4Å:- Chain P: D.131, E.134
- Chain R: D.131, E.134
- Chain W: D.131, E.134
- Ligands: NA.94, NA.105, NA.106, NA.135, NA.136
Ligand excluded by PLIPNA.94: 8 residues within 4Å:- Chain P: E.134
- Chain R: E.134
- Chain W: E.134
- Ligands: NA.93, NA.105, NA.106, NA.135, NA.136
Ligand excluded by PLIPNA.95: 5 residues within 4Å:- Chain P: E.62, H.65, E.107, Q.141
- Ligands: ZN.91
Ligand excluded by PLIPNA.99: 11 residues within 4Å:- Chain M: D.131, E.134
- Chain Q: D.131, E.134
- Chain U: D.131, E.134
- Ligands: NA.75, NA.76, NA.100, NA.123, NA.124
Ligand excluded by PLIPNA.100: 8 residues within 4Å:- Chain M: E.134
- Chain Q: E.134
- Chain U: E.134
- Ligands: NA.75, NA.76, NA.99, NA.123, NA.124
Ligand excluded by PLIPNA.101: 5 residues within 4Å:- Chain Q: E.62, H.65, E.107, Q.141
- Ligands: ZN.97
Ligand excluded by PLIPNA.105: 11 residues within 4Å:- Chain P: D.131, E.134
- Chain R: D.131, E.134
- Chain W: D.131, E.134
- Ligands: NA.93, NA.94, NA.106, NA.135, NA.136
Ligand excluded by PLIPNA.106: 8 residues within 4Å:- Chain P: E.134
- Chain R: E.134
- Chain W: E.134
- Ligands: NA.93, NA.94, NA.105, NA.135, NA.136
Ligand excluded by PLIPNA.107: 5 residues within 4Å:- Chain R: E.62, H.65, E.107, Q.141
- Ligands: ZN.103
Ligand excluded by PLIPNA.111: 11 residues within 4Å:- Chain N: D.131, E.134
- Chain S: D.131, E.134
- Chain X: D.131, E.134
- Ligands: NA.81, NA.82, NA.112, NA.141, NA.142
Ligand excluded by PLIPNA.112: 8 residues within 4Å:- Chain N: E.134
- Chain S: E.134
- Chain X: E.134
- Ligands: NA.81, NA.82, NA.111, NA.141, NA.142
Ligand excluded by PLIPNA.113: 5 residues within 4Å:- Chain S: E.62, H.65, E.107, Q.141
- Ligands: ZN.109
Ligand excluded by PLIPNA.117: 11 residues within 4Å:- Chain O: D.131, E.134
- Chain T: D.131, E.134
- Chain V: D.131, E.134
- Ligands: NA.87, NA.88, NA.118, NA.129, NA.130
Ligand excluded by PLIPNA.118: 8 residues within 4Å:- Chain O: E.134
- Chain T: E.134
- Chain V: E.134
- Ligands: NA.87, NA.88, NA.117, NA.129, NA.130
Ligand excluded by PLIPNA.119: 5 residues within 4Å:- Chain T: E.62, H.65, E.107, Q.141
- Ligands: ZN.115
Ligand excluded by PLIPNA.123: 11 residues within 4Å:- Chain M: D.131, E.134
- Chain Q: D.131, E.134
- Chain U: D.131, E.134
- Ligands: NA.75, NA.76, NA.99, NA.100, NA.124
Ligand excluded by PLIPNA.124: 8 residues within 4Å:- Chain M: E.134
- Chain Q: E.134
- Chain U: E.134
- Ligands: NA.75, NA.76, NA.99, NA.100, NA.123
Ligand excluded by PLIPNA.125: 5 residues within 4Å:- Chain U: E.62, H.65, E.107, Q.141
- Ligands: ZN.121
Ligand excluded by PLIPNA.129: 11 residues within 4Å:- Chain O: D.131, E.134
- Chain T: D.131, E.134
- Chain V: D.131, E.134
- Ligands: NA.87, NA.88, NA.117, NA.118, NA.130
Ligand excluded by PLIPNA.130: 8 residues within 4Å:- Chain O: E.134
- Chain T: E.134
- Chain V: E.134
- Ligands: NA.87, NA.88, NA.117, NA.118, NA.129
Ligand excluded by PLIPNA.131: 5 residues within 4Å:- Chain V: E.62, H.65, E.107, Q.141
- Ligands: ZN.127
Ligand excluded by PLIPNA.135: 11 residues within 4Å:- Chain P: D.131, E.134
- Chain R: D.131, E.134
- Chain W: D.131, E.134
- Ligands: NA.93, NA.94, NA.105, NA.106, NA.136
Ligand excluded by PLIPNA.136: 8 residues within 4Å:- Chain P: E.134
- Chain R: E.134
- Chain W: E.134
- Ligands: NA.93, NA.94, NA.105, NA.106, NA.135
Ligand excluded by PLIPNA.137: 5 residues within 4Å:- Chain W: E.62, H.65, E.107, Q.141
- Ligands: ZN.133
Ligand excluded by PLIPNA.141: 11 residues within 4Å:- Chain N: D.131, E.134
- Chain S: D.131, E.134
- Chain X: D.131, E.134
- Ligands: NA.81, NA.82, NA.111, NA.112, NA.142
Ligand excluded by PLIPNA.142: 8 residues within 4Å:- Chain N: E.134
- Chain S: E.134
- Chain X: E.134
- Ligands: NA.81, NA.82, NA.111, NA.112, NA.141
Ligand excluded by PLIPNA.143: 5 residues within 4Å:- Chain X: E.62, H.65, E.107, Q.141
- Ligands: ZN.139
Ligand excluded by PLIP- 24 x BYD: N,N'-dihydroxybenzene-1,4-dicarboxamide(Non-covalent)
BYD.6: 9 residues within 4Å:- Chain A: H.122
- Chain E: H.122, N.125
- Chain I: H.122
- Ligands: ZN.2, ZN.26, BYD.30, ZN.50, BYD.54
No protein-ligand interaction detected (PLIP)BYD.12: 9 residues within 4Å:- Chain B: H.122
- Chain G: H.122, N.125
- Chain L: H.122
- Ligands: ZN.8, ZN.38, BYD.42, ZN.68, BYD.72
No protein-ligand interaction detected (PLIP)BYD.18: 9 residues within 4Å:- Chain C: H.122
- Chain H: H.122, N.125
- Chain J: H.122
- Ligands: ZN.14, ZN.44, BYD.48, ZN.56, BYD.60
No protein-ligand interaction detected (PLIP)BYD.24: 9 residues within 4Å:- Chain D: H.122
- Chain F: H.122, N.125
- Chain K: H.122
- Ligands: ZN.20, ZN.32, BYD.36, ZN.62, BYD.66
No protein-ligand interaction detected (PLIP)BYD.30: 9 residues within 4Å:- Chain A: H.122
- Chain E: H.122
- Chain I: H.122, N.125
- Ligands: ZN.2, BYD.6, ZN.26, ZN.50, BYD.54
No protein-ligand interaction detected (PLIP)BYD.36: 9 residues within 4Å:- Chain D: H.122
- Chain F: H.122
- Chain K: H.122, N.125
- Ligands: ZN.20, BYD.24, ZN.32, ZN.62, BYD.66
No protein-ligand interaction detected (PLIP)BYD.42: 9 residues within 4Å:- Chain B: H.122
- Chain G: H.122
- Chain L: H.122, N.125
- Ligands: ZN.8, BYD.12, ZN.38, ZN.68, BYD.72
No protein-ligand interaction detected (PLIP)BYD.48: 9 residues within 4Å:- Chain C: H.122
- Chain H: H.122
- Chain J: H.122, N.125
- Ligands: ZN.14, BYD.18, ZN.44, ZN.56, BYD.60
No protein-ligand interaction detected (PLIP)BYD.54: 9 residues within 4Å:- Chain A: H.122, N.125
- Chain E: H.122
- Chain I: H.122
- Ligands: ZN.2, BYD.6, ZN.26, BYD.30, ZN.50
No protein-ligand interaction detected (PLIP)BYD.60: 9 residues within 4Å:- Chain C: H.122, N.125
- Chain H: H.122
- Chain J: H.122
- Ligands: ZN.14, BYD.18, ZN.44, BYD.48, ZN.56
No protein-ligand interaction detected (PLIP)BYD.66: 9 residues within 4Å:- Chain D: H.122, N.125
- Chain F: H.122
- Chain K: H.122
- Ligands: ZN.20, BYD.24, ZN.32, BYD.36, ZN.62
No protein-ligand interaction detected (PLIP)BYD.72: 9 residues within 4Å:- Chain B: H.122, N.125
- Chain G: H.122
- Chain L: H.122
- Ligands: ZN.8, BYD.12, ZN.38, BYD.42, ZN.68
No protein-ligand interaction detected (PLIP)BYD.78: 9 residues within 4Å:- Chain M: H.122
- Chain Q: H.122, N.125
- Chain U: H.122
- Ligands: ZN.74, ZN.98, BYD.102, ZN.122, BYD.126
No protein-ligand interaction detected (PLIP)BYD.84: 9 residues within 4Å:- Chain N: H.122
- Chain S: H.122, N.125
- Chain X: H.122
- Ligands: ZN.80, ZN.110, BYD.114, ZN.140, BYD.144
No protein-ligand interaction detected (PLIP)BYD.90: 9 residues within 4Å:- Chain O: H.122
- Chain T: H.122, N.125
- Chain V: H.122
- Ligands: ZN.86, ZN.116, BYD.120, ZN.128, BYD.132
No protein-ligand interaction detected (PLIP)BYD.96: 9 residues within 4Å:- Chain P: H.122
- Chain R: H.122, N.125
- Chain W: H.122
- Ligands: ZN.92, ZN.104, BYD.108, ZN.134, BYD.138
No protein-ligand interaction detected (PLIP)BYD.102: 9 residues within 4Å:- Chain M: H.122
- Chain Q: H.122
- Chain U: H.122, N.125
- Ligands: ZN.74, BYD.78, ZN.98, ZN.122, BYD.126
No protein-ligand interaction detected (PLIP)BYD.108: 9 residues within 4Å:- Chain P: H.122
- Chain R: H.122
- Chain W: H.122, N.125
- Ligands: ZN.92, BYD.96, ZN.104, ZN.134, BYD.138
No protein-ligand interaction detected (PLIP)BYD.114: 9 residues within 4Å:- Chain N: H.122
- Chain S: H.122
- Chain X: H.122, N.125
- Ligands: ZN.80, BYD.84, ZN.110, ZN.140, BYD.144
No protein-ligand interaction detected (PLIP)BYD.120: 9 residues within 4Å:- Chain O: H.122
- Chain T: H.122
- Chain V: H.122, N.125
- Ligands: ZN.86, BYD.90, ZN.116, ZN.128, BYD.132
No protein-ligand interaction detected (PLIP)BYD.126: 9 residues within 4Å:- Chain M: H.122, N.125
- Chain Q: H.122
- Chain U: H.122
- Ligands: ZN.74, BYD.78, ZN.98, BYD.102, ZN.122
No protein-ligand interaction detected (PLIP)BYD.132: 9 residues within 4Å:- Chain O: H.122, N.125
- Chain T: H.122
- Chain V: H.122
- Ligands: ZN.86, BYD.90, ZN.116, BYD.120, ZN.128
No protein-ligand interaction detected (PLIP)BYD.138: 9 residues within 4Å:- Chain P: H.122, N.125
- Chain R: H.122
- Chain W: H.122
- Ligands: ZN.92, BYD.96, ZN.104, BYD.108, ZN.134
No protein-ligand interaction detected (PLIP)BYD.144: 9 residues within 4Å:- Chain N: H.122, N.125
- Chain S: H.122
- Chain X: H.122
- Ligands: ZN.80, BYD.84, ZN.110, BYD.114, ZN.140
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sontz, P.A. et al., A Metal Organic Framework with Spherical Protein Nodes: Rational Chemical Design of 3D Protein Crystals. J.Am.Chem.Soc. (2015)
- Release Date
- 2015-09-09
- Peptides
- Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.79 Å
- Oligo State
- homo-24-mer
- Ligands
- 48 x ZN: ZINC ION(Non-covalent)
- 72 x NA: SODIUM ION(Non-functional Binders)
- 24 x BYD: N,N'-dihydroxybenzene-1,4-dicarboxamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sontz, P.A. et al., A Metal Organic Framework with Spherical Protein Nodes: Rational Chemical Design of 3D Protein Crystals. J.Am.Chem.Soc. (2015)
- Release Date
- 2015-09-09
- Peptides
- Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A