SMTL ID : 5co4.1

Structural insights into the 2-OH methylation of C/U34 on tRNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)

MTA.1: 17 residues within 4Å: Chain A: F.108, S.109, A.110, F.129, G.130, P.131, E.132, G.135, L.136, L.147, K.148, I.149, M.151, S.157, L.158, L.160, A.163 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.108, A:G.130, A:L.136, A:I.149, A:I.149, A:L.158 MTA.3: 18 residues within 4Å: Chain B: F.108, S.109, A.110, F.129, G.130, P.131, E.132, G.135, L.136, L.147, K.148, I.149, M.151, S.157, L.158, L.160, A.163 Ligands: GOL.2 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:F.108, B:G.130, B:L.136, B:I.149, B:I.149, B:L.158

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain B: F.108, S.109, A.110, R.111, G.135, L.136, L.141 Ligands: MTA.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.110, B:R.111, B:L.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, W. et al., Structural insights into the 2-OH methylation of C34 or U34 on tRNA. To Be Published

Release Date

2016-07-20

Peptides

Putative tRNA (cytidine(34)-2'-O)-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Putative tRNA (cytidine(34)-2'-O)-methyltransferase