SMTL ID : 5cor.1 (1 other biounit)

X-RAY STRUCTURE OF MACROPHAGE INFLAMMATORY PROTEIN-1 ALPHA (CCL3) N-TERMINAL-SWITCH POLYMER

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-pentamer

Ligands

6 x HEZ: HEXANE-1,6-DIOL(Non-covalent)(Non-functional Binders)

HEZ.1: 4 residues within 4Å: Chain A: Y.28, F.29, E.30 Ligands: HEZ.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.28, A:E.30 Hydrogen bonds: A:E.30 HEZ.2: 1 residues within 4Å: Ligands: HEZ.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.30 HEZ.3: 7 residues within 4Å: Chain A: R.46 Chain B: Q.22, I.25, A.26, Y.62, D.65, L.66 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.46, B:Q.22, B:Y.62 HEZ.4: 5 residues within 4Å: Chain C: Q.19, P.21, Q.22, W.58, Y.62 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:Q.22, C:Y.62 Hydrogen bonds: C:Q.19, C:Q.22, C:Y.62 HEZ.5: 8 residues within 4Å: Chain C: R.18, I.20, P.21, T.44, R.48, V.50 Chain D: Y.28, E.30 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:I.20 Hydrogen bonds: C:R.18 HEZ.6: 7 residues within 4Å: Chain B: R.18, T.44, R.48, V.50 Chain C: Y.28, E.30, V.63 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:T.44, B:R.48, B:V.50, C:Y.28 Hydrogen bonds: B:R.18, C:E.30

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 2 residues within 4Å: Chain E: S.2, L.3 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:L.3 ACT.8: 3 residues within 4Å: Chain E: Q.19, W.58, K.61 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:K.61 Hydrogen bonds: E:Q.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, W.G. et al., Structural basis for oligomerization and glycosaminoglycan binding of CCL5 and CCL3. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-04-13

Peptides

C-C motif chemokine 3: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
G

E
I

C-C motif chemokine 3

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