SMTL ID : 5cq3.1

Crystal structure of the bromodomain of bromodomain adjacent to zinc finger domain protein 2B (BAZ2B) in complex with 6-Hydroxypicolinic acid (SGC - Diamond I04-1 fragment screening)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: M.23, E.27, K.112, T.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.112, A:K.112, A:T.116 EDO.2: 3 residues within 4Å: Ligands: 53B.3, DMS.4, PO4.5 No protein-ligand interaction detected (PLIP)

1 x 53B: 6-hydroxypyridine-2-carboxylic acid(Non-covalent)

53B.3: 9 residues within 4Å: Chain A: V.41, V.46, Y.49, F.91, N.92, I.98 Ligands: EDO.2, DMS.4, PO4.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.41, A:V.46 Hydrogen bonds: A:N.92, A:N.92 pi-Stacking: A:F.91

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: S.96, D.97, I.98 Ligands: EDO.2, 53B.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.97, A:I.98 Water bridges: A:S.96, A:D.97 Salt bridges: A:D.97

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 5 residues within 4Å: Chain A: N.92, E.93, S.96 Ligands: EDO.2, 53B.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.92, A:E.93, A:E.93, A:S.96 Water bridges: A:F.91, A:N.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradley, A. et al., Crystal structure of the second bromodomain of bromodomain adjancent to zinc finger domain protein 2B (BAZ2B) in complex with 6-Hydroxypicolinic acid (SGC - Diamond I04-1 fragment screening). To be published

Release Date

2015-09-09

Peptides

Bromodomain adjacent to zinc finger domain protein 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain adjacent to zinc finger domain protein 2B

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