SMTL ID : 5cqi.1

Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.60, E.62, C.91, W.94, C.96 Ligands: GOL.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.60, A:C.91, A:C.96, H2O.2

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 12 residues within 4Å: Chain A: R.26, R.27, Q.28, T.29, N.55, H.60, E.62, W.88, C.91, Y.120 Ligands: ZN.1, GOL.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.26, A:T.29, A:N.55, A:N.55 Water bridges: A:T.29, A:E.62, A:E.62 GOL.3: 7 residues within 4Å: Chain A: R.27, Q.28, N.55, E.56, S.57, G.58 Ligands: GOL.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.27, A:R.27, A:N.55, A:S.57, A:G.58 GOL.4: 6 residues within 4Å: Chain A: P.21, W.88, R.118, I.119, D.121, Y.122 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.118, A:I.119 Water bridges: A:R.118, A:R.179, A:R.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, K. et al., Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain. J.Biol.Chem. (2015)

Release Date

2015-10-07

Peptides

DNA dC-dU-editing enzyme APOBEC-3B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA dC-dU-editing enzyme APOBEC-3B

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