SMTL ID : 5cr1.1

Crystal structure of TTR/resveratrol/T4 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-tetramer

Ligands

2 x T44: 3,5,3',5'-TETRAIODO-L-THYRONINE(Covalent)

T44.1: 16 residues within 4Å: Chain A: K.6, L.8, T.97, A.99, A.100, L.101, V.112 Chain C: K.6, L.8, S.43, E.45, A.99, A.100, L.101, V.112 Ligands: T44.3 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:L.8, A:A.99, C:K.6, C:L.8 Hydrogen bonds: C:K.6 Salt bridges: C:K.6 T44.3: 16 residues within 4Å: Chain A: K.6, L.8, S.43, E.45, A.99, A.100, L.101, V.112 Chain C: K.6, L.8, T.97, A.99, A.100, L.101, V.112 Ligands: T44.1 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:K.6, A:L.8, C:L.8, C:A.99 Hydrogen bonds: A:K.6 Salt bridges: A:K.6

2 x STL: RESVERATROL(Non-covalent)

STL.2: 16 residues within 4Å: Chain B: K.6, L.8, T.97, A.99, L.101, S.108, T.109, T.110 Chain D: K.6, L.8, A.99, L.101, S.108, T.109, T.110 Ligands: STL.4 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:L.8, D:T.110, B:L.101 Water bridges: D:K.6 STL.4: 16 residues within 4Å: Chain B: K.6, L.8, A.99, L.101, S.108, T.109, T.110 Chain D: K.6, L.8, T.97, A.99, L.101, S.108, T.109, T.110 Ligands: STL.2 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:L.8, B:T.110, D:L.101 Water bridges: B:K.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Florio, P. et al., Transthyretin Binding Heterogeneity and Anti-amyloidogenic Activity of Natural Polyphenols and Their Metabolites. J.Biol.Chem. (2015)

Release Date

2015-10-21

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin