SMTL ID : 5crg.1 (1 other biounit)

Human skeletal calsequestrin, D210G mutant high-calcium complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

41 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.13, V.15, E.55, E.59 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.13, A:V.15, A:E.55, A:E.59, H2O.12, H2O.17 CA.2: 3 residues within 4Å: Chain A: E.199, T.229, T.277 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.199, A:T.229, A:T.277, H2O.14, H2O.16 CA.3: 3 residues within 4Å: Chain A: G.210, P.212, E.217 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:P.212, A:E.217, A:E.217, H2O.9, H2O.18 CA.4: 1 residues within 4Å: Chain A: T.189 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.189, H2O.3, H2O.8, H2O.9, H2O.20 CA.5: 3 residues within 4Å: Chain A: D.5, F.6, E.8 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.5, A:F.6, A:E.8, H2O.3 CA.6: 5 residues within 4Å: Chain A: E.91, E.105, D.107, E.240, E.243 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.91, A:E.105, A:E.105, A:D.107, H2O.2 CA.7: 4 residues within 4Å: Chain A: E.91, D.107, E.243 Ligands: CA.8 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.91, A:D.107, H2O.7, H2O.16, H2O.18 CA.8: 3 residues within 4Å: Chain A: D.93, D.107 Ligands: CA.7 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.93, A:D.107, H2O.9, H2O.16, H2O.25 CA.9: 2 residues within 4Å: Chain A: D.113 Chain B: D.113 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.113, H2O.6, H2O.13, H2O.22, H2O.29 CA.10: 2 residues within 4Å: Chain A: E.117 Chain B: D.290 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: B:D.290, A:E.117, H2O.17, H2O.18, H2O.32 CA.11: 1 residues within 4Å: Chain A: D.165 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.165, H2O.4, H2O.4, H2O.7, H2O.23 CA.12: 2 residues within 4Å: Chain A: E.169, E.215 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.169, A:E.215, H2O.7, H2O.17, H2O.21 CA.13: 1 residues within 4Å: Chain A: P.172 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:P.172, H2O.4, H2O.13, H2O.20, H2O.22 CA.14: 2 residues within 4Å: Chain A: K.301, D.304 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:K.301, A:D.304, H2O.12, H2O.16, H2O.19 CA.15: 2 residues within 4Å: Chain A: D.321, T.353 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.321, A:D.321, A:T.353, H2O.11, H2O.20 CA.16: 1 residues within 4Å: Chain A: D.332 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.332, H2O.17, H2O.17, H2O.20, H2O.25 CA.17: 1 residues within 4Å: Chain A: E.344 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.344, H2O.8, H2O.14, H2O.15 CA.18: 3 residues within 4Å: Chain A: E.256, D.290 Chain B: D.121 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:D.290, B:D.121, H2O.29, H2O.33, H2O.43 CA.19: 4 residues within 4Å: Chain A: D.259, D.261, E.330 Chain B: E.128 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:D.259, A:D.261, A:E.330, B:E.128, H2O.42 CA.20: 4 residues within 4Å: Chain A: D.261, E.331 Chain B: E.135 Ligands: CA.21 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:D.261, A:E.331, B:E.135, H2O.3, H2O.37 CA.21: 5 residues within 4Å: Chain A: D.261, E.264, E.331 Chain B: E.135 Ligands: CA.20 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:E.264, A:E.331, B:E.135, H2O.3, H2O.32 CA.22: 2 residues within 4Å: Chain A: D.121 Chain B: D.290 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:D.121, B:D.290, H2O.3, H2O.10, H2O.43 CA.23: 4 residues within 4Å: Chain A: E.128 Chain B: D.259, D.261, E.330 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:D.259, B:D.259, B:D.261, A:E.128, H2O.27 CA.24: 4 residues within 4Å: Chain A: E.135 Chain B: D.261, E.331 Ligands: CA.25 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.261, B:E.331, H2O.4, H2O.8, H2O.28 CA.25: 5 residues within 4Å: Chain A: E.135 Chain B: D.261, E.264, E.331 Ligands: CA.24 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.264, B:E.331, H2O.2, H2O.28, H2O.38 CA.26: 2 residues within 4Å: Chain A: D.290 Chain B: E.117 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.290, H2O.8, H2O.34, H2O.38, H2O.42 CA.27: 4 residues within 4Å: Chain B: D.13, V.15, E.55, E.59 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.13, B:V.15, B:E.59, H2O.36, H2O.42 CA.28: 3 residues within 4Å: Chain B: E.199, T.229, T.277 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.199, B:T.229, B:T.277, H2O.34, H2O.42 CA.29: 3 residues within 4Å: Chain B: G.210, P.212, E.217 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:G.210, B:P.212, B:E.217, H2O.39, H2O.40 CA.30: 1 residues within 4Å: Chain B: T.189 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:T.189, H2O.29, H2O.32, H2O.35, H2O.43 CA.31: 1 residues within 4Å: Chain B: D.332 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.332, B:D.332, H2O.37, H2O.38, H2O.39 CA.32: 3 residues within 4Å: Chain B: D.5, F.6, E.8 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.5, B:F.6, H2O.30, H2O.40, H2O.43 CA.33: 6 residues within 4Å: Chain B: E.91, E.105, D.107, E.240, E.243 Ligands: CA.34 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.91, B:E.105, B:D.107, B:E.240, H2O.32 CA.34: 5 residues within 4Å: Chain B: E.91, D.107, E.243 Ligands: CA.33, CA.35 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.91, B:D.107, B:E.243, H2O.29, H2O.41 CA.35: 3 residues within 4Å: Chain B: D.93, D.107 Ligands: CA.34 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.93, B:D.107, H2O.37, H2O.37 CA.36: 3 residues within 4Å: Chain B: E.102, E.169 Ligands: CA.37 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.102, B:E.169, B:E.169, H2O.30 CA.37: 4 residues within 4Å: Chain B: E.102, E.169, E.215 Ligands: CA.36 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.169, B:E.215, H2O.38, H2O.38, H2O.42 CA.38: 1 residues within 4Å: Chain B: D.165 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.165, H2O.28, H2O.36, H2O.48, H2O.49 CA.39: 1 residues within 4Å: Chain B: P.172 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:P.172, H2O.33, H2O.33, H2O.44, H2O.46 CA.40: 3 residues within 4Å: Chain B: D.245, D.247, I.249 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.245, B:I.249, H2O.34, H2O.43, H2O.44 CA.41: 2 residues within 4Å: Chain B: D.321, T.353 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.321, B:D.321, B:T.353, H2O.40, H2O.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lewis, K.M. et al., Characterization of Two Human Skeletal Calsequestrin Mutants Implicated in Malignant Hyperthermia and Vacuolar Aggregate Myopathy. J.Biol.Chem. (2015)

Release Date

2015-10-07

Peptides

Calsequestrin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Calsequestrin-1

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