SMTL ID : 5crh.1

Human skeletal calsequestrin, M53T mutant high-calcium complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-dimer

Ligands

27 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.13, V.15, E.55, E.59 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.13, A:V.15, A:E.55, A:E.59, H2O.13 CA.2: 3 residues within 4Å: Chain A: E.199, T.229, T.277 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.199, A:T.229, A:T.277, A:T.277, H2O.12 CA.3: 3 residues within 4Å: Chain A: D.210, P.212, E.217 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.210, A:E.217, A:E.217, H2O.9, H2O.14 CA.4: 1 residues within 4Å: Chain A: T.189 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.189, A:T.189, H2O.6, H2O.6, H2O.14 CA.5: 5 residues within 4Å: Chain A: E.91, E.105, D.107, E.240, E.243 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.105, A:D.107, A:E.240, H2O.4, H2O.7 CA.6: 3 residues within 4Å: Chain A: E.91, D.107, E.243 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.107, A:E.243, H2O.5, H2O.11, H2O.13 CA.7: 2 residues within 4Å: Chain A: D.113 Chain B: D.113 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:D.113, B:D.113, H2O.10, H2O.13, H2O.20 CA.8: 2 residues within 4Å: Chain A: E.117 Chain B: D.290 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:E.117, A:E.117, B:D.290, H2O.6, H2O.26 CA.9: 2 residues within 4Å: Chain A: D.121 Chain B: D.290 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:D.121, B:D.290, H2O.2, H2O.10, H2O.11 CA.10: 1 residues within 4Å: Chain A: D.165 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.165, H2O.6, H2O.7, H2O.8, H2O.11 CA.11: 1 residues within 4Å: Chain A: P.172 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:P.172, H2O.1, H2O.2, H2O.14, H2O.16 CA.12: 4 residues within 4Å: Chain A: D.259, D.261, E.330 Chain B: E.128 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.259, A:D.259, A:D.261, H2O.2, H2O.6 CA.13: 4 residues within 4Å: Chain A: D.261, E.331 Chain B: E.135 Ligands: CA.14 6 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:D.261, A:E.331, B:E.135, H2O.2, H2O.19, H2O.22 CA.14: 5 residues within 4Å: Chain A: D.261, E.264, E.331 Chain B: E.135 Ligands: CA.13 6 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:E.264, A:E.331, B:E.135, H2O.2, H2O.3, H2O.23 CA.15: 2 residues within 4Å: Chain A: D.290 Chain B: D.121 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: B:D.121, A:D.290, H2O.19, H2O.22, H2O.23 CA.16: 2 residues within 4Å: Chain A: D.290 Chain B: E.117 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: B:E.117, A:D.290, H2O.10, H2O.12, H2O.26 CA.17: 4 residues within 4Å: Chain A: E.128 Chain B: D.259, D.261, E.330 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:D.259, B:D.261, A:E.128, H2O.1, H2O.25 CA.18: 4 residues within 4Å: Chain A: E.135 Chain B: D.261, E.331 Ligands: CA.19 6 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: B:D.261, B:E.331, A:E.135, H2O.4, H2O.9, H2O.18 CA.19: 5 residues within 4Å: Chain A: E.135 Chain B: D.261, E.264, E.331 Ligands: CA.18 6 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: B:E.264, B:E.331, A:E.135, H2O.4, H2O.19, H2O.26 CA.20: 4 residues within 4Å: Chain B: D.13, V.15, E.55, E.59 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.13, B:V.15, B:E.55, B:E.59, H2O.25, H2O.25 CA.21: 3 residues within 4Å: Chain B: E.199, T.229, T.277 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.199, B:T.229, B:T.277, H2O.21, H2O.26 CA.22: 3 residues within 4Å: Chain B: D.210, P.212, E.217 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.210, B:P.212, B:E.217, B:E.217, H2O.24 CA.23: 1 residues within 4Å: Chain B: T.189 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:T.189, H2O.19, H2O.20, H2O.24, H2O.25 CA.24: 5 residues within 4Å: Chain B: E.91, E.105, D.107, E.240, E.243 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.105, B:D.107, B:E.240, H2O.19, H2O.23 CA.25: 3 residues within 4Å: Chain B: E.91, D.107, E.243 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.107, B:D.107, B:E.243, H2O.24, H2O.26 CA.26: 1 residues within 4Å: Chain B: P.172 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:P.172, H2O.19, H2O.26, H2O.27 CA.27: 1 residues within 4Å: Chain B: D.165 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.165, H2O.19, H2O.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lewis, K.M. et al., Characterization of Two Human Skeletal Calsequestrin Mutants Implicated in Malignant Hyperthermia and Vacuolar Aggregate Myopathy. J.Biol.Chem. (2015)

Release Date

2015-10-07

Peptides

Calsequestrin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Calsequestrin-1