SMTL ID : 5cs9.1

The structure of the NK1 fragment of HGF/SF complexed with MES

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 7 residues within 4Å: Chain B: F.135, E.156, W.161, F.163, R.170, Y.171 Ligands: EDO.2 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.170 Salt bridges: B:E.156, B:R.170 pi-Cation interactions: B:Y.171

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain B: N.152, E.156, G.158, G.159, W.161, Y.171, V.173 Ligands: MES.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.156, B:G.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sigurdardottir, A.G. et al., Exploring the chemical space of the lysine-binding pocket of the first kringle domain of hepatocyte growth factor/scatter factor (HGF/SF) yields a new class of inhibitors of HGF/SF-MET binding. Chem Sci (2015)

Release Date

2015-08-12

Peptides

Hepatocyte growth factor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hepatocyte growth factor

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