SMTL ID : 5csl.1

Crystal structure of the 500 kD yeast acetyl-CoA carboxylase holoenzyme dimer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x BTI: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL(Covalent)(Non-covalent)

BTI.1: 10 residues within 4Å: Chain A: K.714, L.1735, T.1736, M.1744 Chain B: R.1933, F.1935, G.1976, G.1977, V.2003 Ligands: COA.3 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:F.1935, B:F.1935, A:T.1736 BTI.2: 8 residues within 4Å: Chain A: P.1899, V.1902, R.1933, F.1935, S.1936, G.1937 Chain B: T.1736, I.1741 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.1902 Hydrogen bonds: A:F.1935, A:G.1937

2 x COA: COENZYME A(Non-covalent)

COA.3: 16 residues within 4Å: Chain A: I.1572, S.1574, S.1604, A.1606, R.1607, I.1608, R.1710, V.1712, G.1713, I.1714, L.1735 Chain B: V.2003, I.2012, K.2013, R.2015 Ligands: BTI.1 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.1604, A:A.1606, A:A.1606, A:I.1608, B:K.2013, B:K.2013 Salt bridges: A:R.1710, B:R.2015 COA.4: 15 residues within 4Å: Chain A: G.1976, K.2013 Chain B: I.1572, S.1574, S.1604, G.1605, A.1606, R.1607, I.1608, R.1710, V.1712, G.1713, I.1714, L.1735, N.1753 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:A.1606, B:I.1608, A:K.2013, A:R.2015

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, J. et al., Crystal structure of the 500-kDa yeast acetyl-CoA carboxylase holoenzyme dimer. Nature (2015)

Release Date

2015-10-28

Peptides

Acetyl-CoA carboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acetyl-CoA carboxylase

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