SMTL ID : 5cu5.2 (1 other biounit)

Crystal structure of ERAP2 without catalytic Zn(II) atom

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.02 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN- MAN: alpha-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN.1: 6 residues within 4Å: Chain A: H.83, P.84, N.85, E.227, G.246, L.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.246

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 7 residues within 4Å: Chain A: H.77, N.219, T.255, T.256, V.257, K.258, Y.487 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.487

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: N.431, K.545 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.545 NAG.4: 1 residues within 4Å: Chain A: N.294 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.294

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mpakali, A. et al., Structural Basis for Antigenic Peptide Recognition and Processing by Endoplasmic Reticulum (ER) Aminopeptidase 2. J.Biol.Chem. (2015)

Release Date

2015-09-23

Peptides

Endoplasmic reticulum aminopeptidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Endoplasmic reticulum aminopeptidase 2

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