SMTL ID : 5cuh.1 (1 other biounit)

Crystal structure MMP-9 complexes with a constrained hydroxamate based inhibitor LT4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.121, H.125, H.131 Ligands: LTQ.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.121, A:H.125, A:H.131 ZN.2: 4 residues within 4Å: Chain A: H.70, D.72, H.85, H.98 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.70, A:D.72, A:H.85, A:H.98

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.60, G.92, Q.94, D.96 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.60, A:G.92, A:Q.94, A:D.96, H2O.2, H2O.2 CA.4: 3 residues within 4Å: Chain A: D.26, D.101, E.103 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.26, A:D.101, A:E.103, H2O.5, H2O.6 CA.5: 6 residues within 4Å: Chain A: D.77, G.78, D.80, L.82, D.100, E.103 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.77, A:G.78, A:D.80, A:L.82, A:D.100, A:E.103

1 x LTQ: (4S)-3-{[4-(4-cyano-2-methylphenyl)piperazin-1-yl]sulfonyl}-N-hydroxy-1,3-thiazolidine-4-carboxamide(Non-covalent)

LTQ.6: 16 residues within 4Å: Chain A: L.82, L.83, A.84, H.85, L.117, V.118, H.121, E.122, H.125, H.131, L.138, Y.140, P.141, M.142, Y.143 Ligands: ZN.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.117, A:V.118, A:L.138, A:Y.143 Hydrogen bonds: A:L.83, A:A.84, A:A.84 Water bridges: A:R.144 Salt bridges: A:E.122

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 3 residues within 4Å: Chain A: D.72, G.73, Y.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.74 EDO.8: 3 residues within 4Å: Chain A: G.78, K.79, D.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.79 Water bridges: A:D.102

1 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.9: 4 residues within 4Å: Chain A: Y.74, H.85, A.86, F.87 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.85, A:F.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Camodeca, C. et al., Discovery of a new selective inhibitor of A Disintegrin And Metalloprotease 10 (ADAM-10) able to reduce the shedding of NKG2D ligands in Hodgkin's lymphoma cell models. Eur.J.Med.Chem. (2016)

Release Date

2016-02-10

Peptides

Matrix metalloproteinase-9,Matrix metalloproteinase-9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Matrix metalloproteinase-9,Matrix metalloproteinase-9

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