SMTL ID : 5cui.1 (2 other biounits)

Crystal structure of Human Defensin-5 R28A mutant.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: R.6, T.7 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain B: R.6, T.7, G.8 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: E.21, I.22, S.23, G.24 Ligand excluded by PLIP

1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.2: 4 residues within 4Å: Chain A: C.3, Y.4, C.5 Chain B: A.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.5, A:C.5

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.5: 3 residues within 4Å: Chain B: Y.4, C.5, R.6 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:C.5 Water bridges: A:A.1, A:A.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, D. et al., Human Enteric alpha-Defensin 5 Promotes Shigella Infection by Enhancing Bacterial Adhesion and Invasion. Immunity (2018)

Release Date

2016-07-27

Peptides

Defensin-5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Defensin-5

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