SMTL ID : 5cum.1

Crystal structure of Human Defensin-5 Y27A mutant crystal form 1.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-trimer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: E.21, G.24 Chain B: E.21, G.24 Chain C: E.21, G.24 6 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A, 2 interactions with chain B Metal complexes: C:E.21, C:G.24, A:E.21, A:G.24, B:E.21, B:G.24

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.6, T.7, G.8 Ligand excluded by PLIP CL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.9, C.10 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: R.9, R.28 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: R.9, C.10 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain C: R.6, T.7, G.8 Ligand excluded by PLIP

3 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.6: 3 residues within 4Å: Chain A: C.3, Y.4, C.5 No protein-ligand interaction detected (PLIP) IPA.8: 3 residues within 4Å: Chain B: C.3, Y.4, C.5 No protein-ligand interaction detected (PLIP) IPA.10: 2 residues within 4Å: Chain C: C.3, C.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, D. et al., Human Enteric alpha-Defensin 5 Promotes Shigella Infection by Enhancing Bacterial Adhesion and Invasion. Immunity (2018)

Release Date

2016-07-27

Peptides

Defensin-5: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Defensin-5

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