SMTL ID : 5cuo.1

Structure of Rhodopseudomonas palustris PduL - CoA bound form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-dimer

Ligands

2 x COA: COENZYME A(Non-covalent)

COA.1: 25 residues within 4Å: Chain A: G.11, V.12, S.13, N.14, R.15, H.16, H.18, K.37, K.38, M.40, A.47, K.63, R.65, L.67, E.77, E.170, H.172, V.175, N.179, N.185 Chain B: K.58, V.80, A.81, F.84 Ligands: ZN.3 28 PLIP interactions: 5 interactions with chain B, 23 interactions with chain A Water bridges: B:K.58, B:K.58, B:F.84, A:N.14, A:K.37, A:K.37, A:K.38, A:K.38, A:K.38, A:K.38, A:R.65, A:R.65, A:N.185 Salt bridges: B:K.58, A:K.63, A:R.65 pi-Stacking: B:F.84 Hydrophobic interactions: A:A.47, A:R.65, A:L.67 Hydrogen bonds: A:V.12, A:V.12, A:S.13, A:N.14, A:N.14, A:H.172, A:N.179, A:N.179 COA.4: 22 residues within 4Å: Chain A: K.58, V.80, A.81, F.84 Chain B: G.11, V.12, S.13, N.14, R.15, H.16, H.18, M.40, A.47, R.65, L.67, E.77, E.170, H.172, V.175, N.179, N.185 Ligands: ZN.6 21 PLIP interactions: 18 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:A.47 Hydrogen bonds: B:V.12, B:V.12, B:S.13, B:N.14, B:N.14, B:H.172, B:N.179, B:N.179, A:K.58 Water bridges: B:K.37, B:K.37, B:K.37, B:K.37, B:K.38, B:N.185, B:N.185, B:N.185 Salt bridges: B:R.65, A:K.58 pi-Stacking: A:F.84

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.125, H.127, H.172 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.125, A:H.127, A:H.172, H2O.6, H2O.7, H2O.7 ZN.3: 6 residues within 4Å: Chain A: H.16, H.18, L.67, Q.75, E.77 Ligands: COA.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.16, A:H.18, A:E.77 ZN.5: 3 residues within 4Å: Chain B: H.125, H.127, H.172 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.125, B:H.127, B:H.172, H2O.15, H2O.17, H2O.17 ZN.6: 6 residues within 4Å: Chain B: H.16, H.18, L.67, Q.75, E.77 Ligands: COA.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.16, B:H.18, B:E.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Erbilgin, O. et al., The Structural Basis of Coenzyme A Recycling in a Bacterial Organelle. Plos Biol. (2016)

Release Date

2016-03-23

Peptides

Phosphate propanoyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphate propanoyltransferase

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