SMTL ID : 5cup.1

Structure of Rhodopseudomonas palustris PduL - phosphate bound form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.125, H.127, H.172 Ligands: PO4.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.125, A:H.127, A:H.172 ZN.2: 6 residues within 4Å: Chain A: H.16, H.18, L.67, Q.75, E.77 Ligands: PO4.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.16, A:H.18, A:E.77, A:E.77 ZN.5: 4 residues within 4Å: Chain B: H.125, H.127, H.172 Ligands: PO4.7 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.125, B:H.127, B:H.172, H2O.5 ZN.6: 6 residues within 4Å: Chain B: H.16, H.18, L.67, Q.75, E.77 Ligands: PO4.7 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.16, B:H.18, B:E.77

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 13 residues within 4Å: Chain A: H.16, H.18, Q.45, R.71, Q.75, E.77, S.95, H.125, H.127, R.162, H.172 Ligands: ZN.1, ZN.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.45, A:Q.75 Salt bridges: A:H.18, A:R.71, A:H.125, A:H.127 PO4.4: 4 residues within 4Å: Chain A: S.20, T.22, D.23, K.115 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.20, A:S.20, A:D.23 Water bridges: A:K.115, A:K.115, A:K.115 Salt bridges: A:K.115 PO4.7: 12 residues within 4Å: Chain B: H.16, H.18, Q.45, R.71, Q.75, E.77, S.95, H.125, H.127, H.172 Ligands: ZN.5, ZN.6 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.45 Water bridges: B:S.13, B:Q.45 Salt bridges: B:H.18, B:R.71, B:H.125, B:H.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Erbilgin, O. et al., The Structural Basis of Coenzyme A Recycling in a Bacterial Organelle. Plos Biol. (2016)

Release Date

2016-03-23

Peptides

Phosphate propanoyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphate propanoyltransferase

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