SMTL ID : 5cvb.1 (1 other biounit)

Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a1a1a1 of type I collagen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: E.54, H.55 Chain B: V.45 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.54, A:E.54, A:H.55 GOL.2: 3 residues within 4Å: Chain A: F.56 Chain C: Q.58, L.59 2 PLIP interactions: 2 interactions with chain C Water bridges: C:Q.58, C:L.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boudko, S.P. et al., Structural insight for chain selection and stagger control in collagen. Sci Rep (2016)

Release Date

2016-08-10

Peptides

Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain: A
Collagen alpha-1(I) chain,Collagen alpha-2(IX) chain: B
Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain

Collagen alpha-1(I) chain,Collagen alpha-2(IX) chain

Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain

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