SMTL ID : 5cvl.1

WDR48 (UAF-1), residues 2-580

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: K.183, R.208, K.217, K.220 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:K.183, A:R.208, A:K.217, A:K.220 PO4.2: 3 residues within 4Å: Chain A: R.289, K.309, K.333 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.289, A:R.289, A:K.333, A:K.333 Salt bridges: A:R.289, A:K.333

7 x AU: GOLD ION(Non-covalent)

AU.3: 5 residues within 4Å: Chain A: H.281, Y.283, C.293, I.344 Ligands: AU.9 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.293 AU.4: 3 residues within 4Å: Chain A: C.100, E.145, N.162 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.100 AU.5: 3 residues within 4Å: Chain A: C.381, L.439 Ligands: AU.8 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.381 AU.6: 3 residues within 4Å: Chain A: C.124, S.126, T.127 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.124, A:T.127 AU.7: 4 residues within 4Å: Chain A: R.250, R.258, C.259, T.262 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.259, A:T.262 AU.8: 3 residues within 4Å: Chain A: C.381, I.383 Ligands: AU.5 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.381, H2O.4 AU.9: 5 residues within 4Å: Chain A: H.281, C.293, I.301, R.348 Ligands: AU.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, J. et al., Structural Insights into WD-Repeat 48 Activation of Ubiquitin-Specific Protease 46. Structure (2015)

Release Date

2015-10-07

Peptides

WD repeat-containing protein 48: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 48

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