- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x CD: CADMIUM ION(Non-covalent)
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.5: 7 residues within 4Å:- Chain A: F.158, D.159
- Chain B: L.14, G.148, R.149, L.150, S.153
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:L.14
- Hydrogen bonds: B:L.150, B:L.150, B:S.153
- Water bridges: B:S.153
- Salt bridges: B:R.149
ACT.14: 7 residues within 4Å:- Chain A: L.14, G.148, R.149, L.150, S.153
- Chain B: F.158, D.159
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.14
- Hydrogen bonds: A:L.150, A:L.150, A:S.153
- Water bridges: A:S.153
- Salt bridges: A:R.149
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.6: 3 residues within 4Å:- Chain A: E.86, R.116, R.118
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.116, A:R.118, A:R.118
NA.7: 1 residues within 4Å:- Chain A: L.14
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.14
NA.15: 3 residues within 4Å:- Chain B: E.86, R.116, R.118
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.116, B:R.118, B:R.118
NA.16: 1 residues within 4Å:- Chain B: L.14
No protein-ligand interaction detected (PLIP)- 2 x 56F: 1-(4-chlorophenyl)-N-methylmethanesulfonamide(Non-covalent)
56F.8: 9 residues within 4Å:- Chain A: V.45, W.96, E.97, G.98, F.134, R.137, V.138, H.141, E.142
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.134
- Hydrogen bonds: A:E.97, A:G.98, A:G.98
56F.17: 9 residues within 4Å:- Chain B: V.45, W.96, E.97, G.98, F.134, R.137, V.138, H.141, E.142
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:F.134
- Hydrogen bonds: B:G.98, B:G.98
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ngo, H.P.T. et al., Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryze, in complex with fragment 571. To Be Published
- Release Date
- 2016-08-03
- Peptides
- Peptide deformylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x CD: CADMIUM ION(Non-covalent)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 2 x 56F: 1-(4-chlorophenyl)-N-methylmethanesulfonamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ngo, H.P.T. et al., Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryze, in complex with fragment 571. To Be Published
- Release Date
- 2016-08-03
- Peptides
- Peptide deformylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A