SMTL ID : 5cwe.1

Structure of CYP107L2 from Streptomyces avermitilis with lauric acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: F.337, Y.343, R.351 Chain B: R.318 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.343, A:Y.343 Water bridges: A:H.334, B:R.318 Salt bridges: A:R.351, B:R.318 SO4.4: 6 residues within 4Å: Chain A: R.318 Chain B: H.334, F.337, Y.343, R.351 Ligands: GOL.7 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:R.318, B:R.351 Water bridges: B:H.334, B:G.338

2 x DAO: LAURIC ACID(Non-covalent)

DAO.2: 9 residues within 4Å: Chain A: Y.82, L.84, I.167, I.229, A.233, T.237, T.284, Y.285 Ligands: HEM.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.84, A:I.167, A:A.233 DAO.5: 9 residues within 4Å: Chain B: Y.82, L.84, I.167, I.229, V.232, A.233, T.237, L.382 Ligands: HEM.6 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.167, B:I.229, B:V.232, B:A.233, B:L.382, B:L.382

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.3: 29 residues within 4Å: Chain A: K.64, L.83, L.84, H.91, R.95, F.102, I.146, I.229, A.233, G.234, T.237, T.238, P.279, V.280, A.283, T.284, R.286, L.309, A.336, F.337, G.338, I.341, H.342, C.344, L.345, G.346, L.349, A.350 Ligands: DAO.2 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:L.84, A:F.102, A:I.146, A:I.229, A:A.233, A:V.280, A:L.309, A:F.337, A:L.345, A:L.349, A:A.350 Hydrogen bonds: A:T.284, A:I.341 Water bridges: A:H.342 Salt bridges: A:K.64, A:H.91, A:R.95, A:R.286, A:H.342 Metal complexes: A:C.344 HEM.6: 29 residues within 4Å: Chain B: K.64, L.83, L.84, H.91, R.95, F.102, I.146, A.233, G.234, T.237, T.238, L.241, P.279, V.280, A.283, T.284, R.286, L.309, A.336, F.337, G.338, I.341, H.342, C.344, L.345, G.346, L.349, A.350 Ligands: DAO.5 19 PLIP interactions: 19 interactions with chain B, Hydrophobic interactions: B:L.83, B:L.84, B:F.102, B:I.146, B:A.233, B:L.241, B:V.280, B:L.309, B:F.337, B:L.349, B:A.350 Hydrogen bonds: B:T.284 Water bridges: B:H.342 Salt bridges: B:K.64, B:H.91, B:R.95, B:R.286, B:H.342 Metal complexes: B:C.344

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 5 residues within 4Å: Chain A: G.333 Chain B: Q.332, G.333, H.334 Ligands: SO4.4 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Water bridges: A:G.333, B:H.334 Hydrogen bonds: B:H.334, B:H.334

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pham, T.-V. et al., Structure of CYP107L2 from Streptomyces avermitilis with lauric acid. To Be Published

Release Date

2016-08-03

Peptides

Cytochrome P450 hydroxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cytochrome P450 hydroxylase

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