- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 19 x GOL: GLYCEROL(Non-functional Binders)
GOL.8: 6 residues within 4Å:- Chain A: Y.380, G.381, D.382, D.478, F.644
- Ligands: GOL.12
Ligand excluded by PLIPGOL.9: 1 residues within 4Å:- Chain A: K.464
Ligand excluded by PLIPGOL.10: 2 residues within 4Å:- Chain A: Y.123
- Ligands: GOL.11
Ligand excluded by PLIPGOL.11: 2 residues within 4Å:- Chain A: R.460
- Ligands: GOL.10
Ligand excluded by PLIPGOL.12: 6 residues within 4Å:- Chain A: L.544, A.641, Y.642, A.643, F.644
- Ligands: GOL.8
Ligand excluded by PLIPGOL.13: 7 residues within 4Å:- Chain A: H.141, V.149, K.150, R.151, E.293, K.295
- Ligands: GOL.16
Ligand excluded by PLIPGOL.14: 4 residues within 4Å:- Chain A: R.53, R.66, K.67, S.690
Ligand excluded by PLIPGOL.15: 3 residues within 4Å:- Chain A: R.43
- Chain B: N.242, I.244
Ligand excluded by PLIPGOL.16: 5 residues within 4Å:- Chain A: T.140, H.141, V.149, K.150
- Ligands: GOL.13
Ligand excluded by PLIPGOL.17: 3 residues within 4Å:- Chain A: T.254, R.256, D.257
Ligand excluded by PLIPGOL.18: 3 residues within 4Å:- Chain A: T.339, E.340, D.359
Ligand excluded by PLIPGOL.19: 8 residues within 4Å:- Chain A: P.124, V.125, C.126, G.127, I.128, K.285, H.286, P.287
Ligand excluded by PLIPGOL.27: 6 residues within 4Å:- Chain B: S.351, T.353, N.354, L.645, T.646, R.647
Ligand excluded by PLIPGOL.28: 6 residues within 4Å:- Chain B: H.141, V.149, K.150, R.151, E.293, K.295
Ligand excluded by PLIPGOL.29: 5 residues within 4Å:- Chain B: H.141, N.142, S.148, V.149, K.150
Ligand excluded by PLIPGOL.30: 4 residues within 4Å:- Chain B: R.53, R.66, K.67, S.690
Ligand excluded by PLIPGOL.31: 4 residues within 4Å:- Chain B: Y.380, G.381, D.382, F.644
Ligand excluded by PLIPGOL.32: 4 residues within 4Å:- Chain B: L.544, Y.642, A.643, F.644
Ligand excluded by PLIPGOL.33: 2 residues within 4Å:- Chain B: R.73, L.75
Ligand excluded by PLIP- 1 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
CDP.21: 13 residues within 4Å:- Chain A: E.583, T.584, T.586, M.587, R.590, T.591, D.594, M.628, R.629, V.630, Q.631, E.632, A.638
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.583, A:Q.631, A:E.632
- Water bridges: A:E.632, A:A.638
CDP.34: 11 residues within 4Å:- Chain B: T.584, T.586, M.587, R.590, T.591, D.594, M.628, V.630, Q.631, E.632, A.638
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:D.594, B:Q.631, B:Q.631, B:E.632, B:E.632, B:E.632
- Water bridges: B:A.638, B:A.638
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferrero, D.S. et al., The Structure of the RNA-Dependent RNA Polymerase of a Permutotetravirus Suggests a Link between Primer-Dependent and Primer-Independent Polymerases. Plos Pathog. (2015)
- Release Date
- 2015-11-11
- Peptides
- RNA-dependent RNA polymerase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 19 x GOL: GLYCEROL(Non-functional Binders)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferrero, D.S. et al., The Structure of the RNA-Dependent RNA Polymerase of a Permutotetravirus Suggests a Link between Primer-Dependent and Primer-Independent Polymerases. Plos Pathog. (2015)
- Release Date
- 2015-11-11
- Peptides
- RNA-dependent RNA polymerase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B