SMTL ID : 5cxd.1

1.75 Angstrom resolution crystal structure of the apo-form acyl-carrier-protein synthase (AcpS) (acpS; purification tag off) from Staphylococcus aureus subsp. aureus COL in the I4 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-trimer

Ligands

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: F.44, T.45, H.46 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: P.91, S.103, I.104 Chain B: K.66 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: N.36, K.40, Y.84 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: I.13, E.14, R.17 Chain C: T.107 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: S.105, H.106 Chain B: D.11 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain B: F.44, T.45, H.46, R.49 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: T.107 Chain B: I.13, E.14, R.17 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: K.40, R.49, F.53, R.57 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: Q.25, P.26, K.27, L.28 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: T.107 Chain C: I.13, E.14, R.17 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain C: Q.25, P.26, K.27, L.28 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain C: F.44, T.45, H.46, R.49 Ligand excluded by PLIP

1 x NI: NICKEL (II) ION(Non-covalent)

NI.10: 2 residues within 4Å: Chain C: H.6, F.98 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.6, H2O.12

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.14: 3 residues within 4Å: Chain C: E.96, G.97, F.98 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.97 Water bridges: C:K.92, C:K.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halavaty, A.S. et al., 1.75 Angstrom resolution crystal structure of the apo-form acyl-carrier-protein synthase (AcpS) (acpS; purification tag off) from Staphylococcus aureus subsp. aureus COL in the I4 space group. To Be Published

Release Date

2015-08-05

Peptides

Holo-[acyl-carrier-protein] synthase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Holo-[acyl-carrier-protein] synthase