SMTL ID : 5czt.1

Neisseria meningitidis 3 dexy-D-arabino-heptulosonate 7-phosphate synthase Glu176Ala variant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: C.63, R.94, H.270, E.304, D.324 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.63, A:H.270, A:E.304, A:D.324, H2O.6571 MN.3: 5 residues within 4Å: Chain B: C.63, R.94, H.270, E.304, D.324 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.63, B:H.270, B:E.304, B:D.324, H2O.6585 MN.5: 5 residues within 4Å: Chain C: C.63, R.94, H.270, E.304, D.324 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.63, C:H.270, C:E.304, C:D.324, H2O.6599 MN.8: 5 residues within 4Å: Chain D: C.63, R.94, H.270, E.304, D.324 5 PLIP interactions: 1 Ligand-Water interactions, 4 interactions with chain D Metal complexes: H2O.6614, D:C.63, D:H.270, D:E.304, D:D.324

4 x PHE: PHENYLALANINE(Non-covalent)

PHE.2: 14 residues within 4Å: Chain A: M.149, P.152, Q.153, A.156, L.177, G.180, L.181, S.182, F.211, S.213, K.216, V.223 Chain B: D.8, D.9 11 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B, 1 Ligand-Ligand interactions Hydrophobic interactions: A:P.152, A:Q.153, A:L.177, A:F.211, A:F.211, A:V.223 Hydrogen bonds: A:Q.153, A:S.182, A:K.216, B:D.9 Water bridges: F.2 PHE.4: 15 residues within 4Å: Chain A: D.8, D.9, I.12 Chain B: M.149, P.152, Q.153, A.156, L.177, G.180, L.181, S.182, F.211, S.213, K.216, V.223 14 PLIP interactions: 3 interactions with chain A, 10 interactions with chain B, 1 Ligand-Ligand interactions Hydrogen bonds: A:D.8, A:D.9, A:D.9, B:Q.153, B:S.182, B:K.216, F.4 Hydrophobic interactions: B:P.152, B:Q.153, B:L.177, B:F.211, B:V.223 Water bridges: B:D.157, B:C.183 PHE.7: 15 residues within 4Å: Chain C: M.149, P.152, Q.153, A.156, L.177, G.180, L.181, S.182, F.211, S.213, K.216, V.223 Chain D: D.8, D.9, I.12 13 PLIP interactions: 11 interactions with chain C, 2 interactions with chain D, Hydrophobic interactions: C:P.152, C:Q.153, C:L.177, C:F.211, C:F.211, C:V.223 Hydrogen bonds: C:Q.153, C:S.182, C:K.216, D:D.8, D:D.9 Water bridges: C:D.157, C:C.183 PHE.11: 15 residues within 4Å: Chain C: D.8, D.9, I.12 Chain D: M.149, P.152, Q.153, A.156, L.177, G.180, L.181, S.182, F.211, S.213, K.216, V.223 13 PLIP interactions: 3 interactions with chain C, 10 interactions with chain D, Hydrogen bonds: C:D.8, C:D.9, C:D.9, D:Q.153, D:S.182, D:K.216 Hydrophobic interactions: D:P.152, D:Q.153, D:L.177, D:F.211, D:F.211, D:V.223 Water bridges: D:D.157

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain C: K.188, R.236, H.270 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain D: R.94, Y.96, K.188, H.270 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain D: G.165, A.166, R.167, K.188 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Heyes, L.C. et al., Neisseria meningitidis 3 dexy-D-arabino-heptulosonate 7-phosphate synthase Glu176Ala variant at 2.04 Angstroms resolution. To Be Published

Release Date

2016-08-10

Peptides

Phospho-2-dehydro-3-deoxyheptonate aldolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Phospho-2-dehydro-3-deoxyheptonate aldolase