- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)
PEP.2: 13 residues within 4Å:- Chain A: R.94, Y.96, K.99, P.100, E.145, G.165, A.166, R.167, K.188, R.236, H.270, E.304
- Ligands: MN.1
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:P.100
- Hydrogen bonds: A:A.166
- Water bridges: A:K.99, A:K.99, A:K.99, A:E.145, A:R.167, A:R.236
- Salt bridges: A:R.94, A:K.99, A:R.167, A:K.188, A:K.188, A:R.236, A:H.270, A:H.270
PEP.5: 13 residues within 4Å:- Chain B: R.94, Y.96, K.99, E.145, G.165, A.166, R.167, K.188, R.236, H.270, M.302, E.304
- Ligands: MN.4
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:Y.96, B:A.166
- Water bridges: B:K.99, B:E.145, B:R.167, B:R.167
- Salt bridges: B:R.94, B:K.99, B:R.167, B:K.188, B:K.188, B:R.236, B:H.270, B:H.270
PEP.9: 11 residues within 4Å:- Chain C: R.94, Y.96, E.145, G.165, A.166, R.167, K.188, R.236, H.270, M.302
- Ligands: MN.8
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:A.166
- Water bridges: C:R.94, C:Y.96, C:R.167
- Salt bridges: C:R.94, C:R.167, C:K.188, C:K.188, C:R.236, C:H.270, C:H.270
PEP.13: 13 residues within 4Å:- Chain D: R.94, Y.96, K.99, P.100, E.145, G.165, A.166, R.167, K.188, R.236, H.270, E.304
- Ligands: MN.12
17 PLIP interactions:17 interactions with chain D- Hydrophobic interactions: D:P.100
- Hydrogen bonds: D:A.166
- Water bridges: D:K.99, D:K.99, D:K.99, D:E.145, D:R.167, D:R.167, D:R.167
- Salt bridges: D:R.94, D:K.99, D:R.167, D:K.188, D:K.188, D:R.236, D:H.270, D:H.270
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 2 residues within 4Å:- Chain A: R.101, T.102
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:T.102, A:T.102, A:T.102
- Water bridges: A:R.101, A:T.103, A:T.103
- Salt bridges: A:R.101
SO4.15: 3 residues within 4Å:- Chain D: R.101, T.102
- Ligands: EDO.14
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:T.102, D:T.102
- Salt bridges: D:R.101
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 5 residues within 4Å:- Chain A: I.222
- Chain B: F.119, D.120, I.121, N.122
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain B- Water bridges: D:Y.26
- Hydrogen bonds: B:D.120, B:D.120, B:N.122, B:N.122
EDO.7: 2 residues within 4Å:- Chain B: L.115, G.117
No protein-ligand interaction detected (PLIP)EDO.10: 3 residues within 4Å:- Chain C: H.224, T.225, G.226
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.224
EDO.11: 3 residues within 4Å:- Chain C: S.31, L.133, N.137
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.137
EDO.14: 5 residues within 4Å:- Chain D: R.101, R.311, T.323, D.324
- Ligands: SO4.15
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.101, D:R.311, D:D.324
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Heyes, L.C., Neisseria meningitidis 3 deoxy-D-arabino-heptulosonate 7-phosphate synthase Glu176Gln variant at 1.87 Angstroms resolution. To Be Published
- Release Date
- 2016-08-10
- Peptides
- Phospho-2-dehydro-3-deoxyheptonate aldolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Heyes, L.C., Neisseria meningitidis 3 deoxy-D-arabino-heptulosonate 7-phosphate synthase Glu176Gln variant at 1.87 Angstroms resolution. To Be Published
- Release Date
- 2016-08-10
- Peptides
- Phospho-2-dehydro-3-deoxyheptonate aldolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D