- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)
PEP.3: 8 residues within 4Å:- Chain A: R.94, Y.96, K.99, E.145, K.188, R.236, H.270, M.302
12 PLIP interactions:12 interactions with chain A- Water bridges: A:R.94, A:R.94, A:R.94, A:E.145, A:K.188, A:R.236
- Salt bridges: A:R.94, A:K.188, A:K.188, A:R.236, A:H.270, A:H.270
PEP.10: 8 residues within 4Å:- Chain B: R.94, Y.96, K.99, E.145, K.188, R.236, H.270, M.302
14 PLIP interactions:14 interactions with chain B- Water bridges: B:R.94, B:R.94, B:R.94, B:Y.96, B:E.145, B:E.145, B:E.145, B:R.236
- Salt bridges: B:R.94, B:K.188, B:K.188, B:R.236, B:H.270, B:H.270
PEP.16: 8 residues within 4Å:- Chain C: R.94, Y.96, K.99, E.145, K.188, R.236, H.270, M.302
14 PLIP interactions:14 interactions with chain C- Water bridges: C:R.94, C:R.94, C:R.94, C:E.145, C:E.145, C:E.145, C:E.145, C:R.236
- Salt bridges: C:R.94, C:K.188, C:K.188, C:R.236, C:H.270, C:H.270
PEP.21: 8 residues within 4Å:- Chain D: R.94, Y.96, K.99, E.145, K.188, R.236, H.270, M.302
11 PLIP interactions:11 interactions with chain D- Water bridges: D:R.94, D:K.99, D:E.145, D:E.145
- Salt bridges: D:R.94, D:K.99, D:K.188, D:K.188, D:R.236, D:H.270, D:H.270
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 1 residues within 4Å:- Chain A: Y.26
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.27
- Water bridges: A:Y.26, A:Y.26
SO4.11: 3 residues within 4Å:- Chain B: R.256, A.257, G.259
No protein-ligand interaction detected (PLIP)SO4.12: 2 residues within 4Å:- Chain B: Y.26, E.27
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.26
- Water bridges: B:Y.26
SO4.22: 2 residues within 4Å:- Chain D: Y.26, E.27
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:Y.26
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 4 x PHE: PHENYLALANINE(Non-covalent)
PHE.6: 15 residues within 4Å:- Chain A: M.149, P.152, Q.153, A.156, L.177, G.180, L.181, S.182, F.211, S.213, K.216, V.223
- Chain B: D.8, D.9, I.12
13 PLIP interactions:3 interactions with chain B, 1 Ligand-Ligand interactions, 9 interactions with chain A- Hydrophobic interactions: B:I.12, A:P.152, A:Q.153, A:L.177, A:F.211, A:V.223
- Hydrogen bonds: B:D.8, B:D.9, F.6, A:Q.153, A:S.182, A:K.216
- Water bridges: A:D.157
PHE.13: 14 residues within 4Å:- Chain A: D.8, D.9
- Chain B: M.149, P.152, Q.153, A.156, L.177, G.180, L.181, S.182, F.211, S.213, K.216, V.223
14 PLIP interactions:10 interactions with chain B, 3 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: B:P.152, B:Q.153, B:L.177, B:F.211, B:V.223
- Hydrogen bonds: B:Q.153, B:S.182, B:K.216, A:D.8, A:D.9, A:D.9, F.13
- Water bridges: B:D.157, B:C.183
PHE.17: 14 residues within 4Å:- Chain C: M.149, P.152, Q.153, A.156, L.177, G.180, L.181, S.182, F.211, S.213, K.216, V.223
- Chain D: D.8, D.9
12 PLIP interactions:10 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:P.152, C:Q.153, C:L.177, C:F.211, C:V.223
- Hydrogen bonds: C:Q.153, C:S.182, C:K.216, D:D.8, D:D.9
- Water bridges: C:D.157, C:C.183
PHE.23: 14 residues within 4Å:- Chain C: D.8, D.9
- Chain D: M.149, P.152, Q.153, A.156, L.177, G.180, L.181, S.182, F.211, S.213, K.216, V.223
13 PLIP interactions:10 interactions with chain D, 3 interactions with chain C,- Hydrophobic interactions: D:P.152, D:Q.153, D:L.177, D:F.211, D:V.223
- Hydrogen bonds: D:Q.153, D:S.182, D:K.216, C:D.8, C:D.9, C:D.9
- Water bridges: D:D.157, D:C.183
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.8: 5 residues within 4Å:- Chain B: W.106, L.115, D.116, G.117
- Ligands: PEG.9
1 PLIP interactions:1 interactions with chain B- Water bridges: B:W.106
PEG.9: 6 residues within 4Å:- Chain A: S.208, H.209
- Chain B: G.105, A.107, F.119
- Ligands: PEG.8
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:A.107, A:S.208, A:H.209
- Water bridges: B:R.101, B:R.101, B:R.101, A:E.176
PEG.15: 5 residues within 4Å:- Chain C: W.106, L.115, D.116, G.117, D.313
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.313
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Heyes, L.C. et al., Neisseria meningitidis 3 deoxy-D-arabino-heptulosonate 7-phosphate synthase Lys107Ala variant regulated at 1.75 Angstroms resolution. To Be Published
- Release Date
- 2016-08-10
- Peptides
- Phospho-2-dehydro-3-deoxyheptonate aldolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 4 x PHE: PHENYLALANINE(Non-covalent)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Heyes, L.C. et al., Neisseria meningitidis 3 deoxy-D-arabino-heptulosonate 7-phosphate synthase Lys107Ala variant regulated at 1.75 Angstroms resolution. To Be Published
- Release Date
- 2016-08-10
- Peptides
- Phospho-2-dehydro-3-deoxyheptonate aldolase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D