SMTL ID : 5d1b.1 (1 other biounit)

Crystal structure of G117E HDAC8 in complex with TSA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.178, H.180, D.267 Ligands: TSN.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.178, A:H.180, A:D.267

2 x K: POTASSIUM ION(Non-covalent)

K.2: 6 residues within 4Å: Chain A: D.176, D.178, H.180, S.199, L.200, H.201 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.176, A:D.176, A:D.178, A:H.180, A:S.199 K.3: 5 residues within 4Å: Chain A: F.189, T.192, V.195, Y.225, S.226 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:F.189, A:V.195, A:Y.225

1 x TSN: TRICHOSTATIN A(Non-covalent)

TSN.4: 12 residues within 4Å: Chain A: D.101, H.142, H.143, G.151, F.152, D.178, H.180, F.208, D.267, M.274, Y.306 Ligands: ZN.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.152, A:F.208, A:F.208 Hydrogen bonds: A:H.142, A:H.143, A:Y.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Decroos, C. et al., Biochemical and Structural Characterization of HDAC8 Mutants Associated with Cornelia de Lange Syndrome Spectrum Disorders. Biochemistry (2015)

Release Date

2015-10-21

Peptides

Histone deacetylase 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone deacetylase 8

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