SMTL ID : 5d2f.1

4-oxalocrotonate decarboxylase from Pseudomonas putida G7 - apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: Y.62, Y.102, L.237, L.238, E.240, R.241 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.102, A:Y.102, A:E.240 Water bridges: A:E.240 EDO.2: 2 residues within 4Å: Chain A: L.146, H.226 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.226 EDO.3: 5 residues within 4Å: Chain A: H.124, K.126, I.163, D.164, S.165 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.124, A:D.164, A:S.165 Water bridges: A:S.165, A:S.165 EDO.4: 2 residues within 4Å: Chain A: N.21, R.22 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.21, A:N.21, A:R.22 Water bridges: A:R.22 EDO.5: 4 residues within 4Å: Chain A: A.137, P.138, A.151, A.152 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.138, A:A.151 EDO.6: 4 residues within 4Å: Chain A: G.191, R.192, G.276, S.277 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.192, A:S.277, A:S.277 EDO.7: 1 residues within 4Å: Chain A: N.42 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.41, A:L.41 EDO.8: 4 residues within 4Å: Chain A: V.80, D.107, S.110, F.187 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.107, A:S.110 Water bridges: A:S.110 EDO.9: 1 residues within 4Å: Chain A: N.267 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.267, A:R.281 EDO.10: 4 residues within 4Å: Chain A: G.85, L.86, F.172, A.182 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.86 Water bridges: A:M.84, A:T.87 EDO.11: 5 residues within 4Å: Chain A: R.69, I.79, G.81, L.82, T.249 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.69, A:I.79 EDO.12: 4 residues within 4Å: Chain A: G.255, I.256, T.257, A.258 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.222

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.13: 2 residues within 4Å: Chain A: D.118, R.186 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain A: N.169, F.170, K.171 Ligand excluded by PLIP

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.15: 2 residues within 4Å: Chain A: R.71, R.75 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.71, A:R.75 Salt bridges: A:R.71, A:R.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guimaraes, S.L. et al., Crystal Structures of Apo and Liganded 4-Oxalocrotonate Decarboxylase Uncover a Structural Basis for the Metal-Assisted Decarboxylation of a Vinylogous beta-Keto Acid. Biochemistry (2016)

Release Date

2016-05-04

Peptides

4-oxalocrotonate decarboxylase NahK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

4-oxalocrotonate decarboxylase NahK

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