SMTL ID : 5d2m.1 (1 other biounit)

Complex between human SUMO2-RANGAP1, UBC9 and ZNF451

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-2-1-1-mer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: K.21, D.22 Chain D: K.11, A.13, V.19, T.73 Chain E: R.49 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:K.11, D:T.73, D:T.73 Water bridges: A:H.23 EDO.2: 6 residues within 4Å: Chain C: G.105, L.106, L.107, K.108, K.149, N.151 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.105 Water bridges: C:K.149, C:K.149, C:K.149 EDO.3: 5 residues within 4Å: Chain C: F.64, K.65, D.66, E.67, Y.120 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.66, C:D.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cappadocia, L. et al., Structural basis for catalytic activation by the human ZNF451 SUMO E3 ligase. Nat.Struct.Mol.Biol. (2015)

Release Date

2015-11-04

Peptides

SUMO-conjugating enzyme UBC9: A
Small ubiquitin-related modifier 2: BD
Ran GTPase-activating protein 1: C
Zinc finger protein 451: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
E

C
C

E
G

SUMO-conjugating enzyme UBC9

Small ubiquitin-related modifier 2

Ran GTPase-activating protein 1

Zinc finger protein 451

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