SMTL ID : 5d3q.1 (1 other biounit)

Dynamin 1 GTPase-BSE fusion dimer complexed with GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: S.37, A.38, G.39, K.40, S.41, S.42, K.202, D.204, L.205, V.231, N.232, R.233, S.234, Q.235, I.238 Ligands: EDO.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.37, A:G.39, A:K.40, A:S.41, A:S.42, A:S.42, A:K.202, A:K.202, A:N.232, A:N.232, A:Q.235 Water bridges: A:A.38, A:K.40, A:S.41, A:S.234, A:Q.235, A:D.237 Salt bridges: A:D.204 pi-Cation interactions: A:K.202

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: S.41, P.54, R.55 Ligands: GDP.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.41, A:S.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anand, R. et al., Crystal structure of the GTPase domain and the bundle signalling element of dynamin in the GDP state. Biochem.Biophys.Res.Commun. (2016)

Release Date

2015-12-02

Peptides

Dynamin-1,Dynamin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dynamin-1,Dynamin-1

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