SMTL ID : 5d4w.1

Crystal structure of Hsp104

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

homo-trimer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: V.197, I.198, G.199, R.200, E.224, P.225, G.226, V.227, G.228, K.229, T.230, T.231, I.367, L.371, Y.375, P.405, D.406, V.409 Chain B: R.349 17 PLIP interactions: 15 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:I.198, A:G.199, A:G.199, A:G.226, A:V.227, A:G.228, A:K.229, A:K.229, A:T.230, A:T.231, A:T.231, A:Y.375, A:D.406, A:D.406 Salt bridges: A:K.229, B:R.349, B:R.349 ADP.2: 13 residues within 4Å: Chain A: V.600, S.636, T.638, G.639, K.640, T.641, L.642, D.706, I.806, R.810, R.849 Chain B: E.784, R.788 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:T.638, A:G.639, A:K.640, A:T.641, A:T.641, A:T.641, A:L.642, A:D.706, A:R.810, B:E.784, B:R.788 Salt bridges: B:R.788 ADP.3: 19 residues within 4Å: Chain B: P.196, V.197, I.198, G.199, R.200, E.224, P.225, G.226, V.227, G.228, K.229, T.230, T.231, I.367, L.371, Y.375, D.406, V.409 Chain C: R.349 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:I.198, B:G.199, B:G.199, B:E.224, B:G.226, B:G.228, B:K.229, B:T.230, B:T.231, B:T.231 Salt bridges: B:K.229, C:R.349 ADP.4: 12 residues within 4Å: Chain B: V.600, V.601, G.602, T.638, G.639, K.640, T.641, L.642, I.806, R.849 Chain C: E.784, R.788 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:V.601, B:G.602, B:G.639, B:K.640, B:T.641, B:T.641, B:T.641, C:R.788 Salt bridges: B:R.849, C:R.788 ADP.5: 18 residues within 4Å: Chain C: V.197, I.198, G.199, R.200, E.224, P.225, G.226, V.227, G.228, K.229, T.230, T.231, I.367, L.371, Y.375, P.405, D.406, V.409 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:I.198, C:G.199, C:G.199, C:G.226, C:V.227, C:G.228, C:K.229, C:T.230, C:T.230, C:T.231, C:T.231, C:Y.375, C:Y.375, C:D.406 Salt bridges: C:K.229 ADP.6: 10 residues within 4Å: Chain C: V.600, V.601, T.638, G.639, K.640, T.641, L.642, I.806, R.810, A.848 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:V.601, C:V.601, C:G.639, C:K.640, C:T.641, C:T.641, C:T.641, C:R.810, C:R.810

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heuck, A. et al., Structural basis for the disaggregase activity and regulation of Hsp104. Elife (2016)

Release Date

2016-12-07

Peptides

Putative heat shock protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Putative heat shock protein