SMTL ID : 5d6a.1

2.7 Angstrom Crystal Structure of ABC transporter ATPase from Vibrio vulnificus in Complex with Adenylyl-imidodiphosphate (AMP-PNP)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: G.267, D.363 Chain B: S.338, G.339, S.340 Ligands: ANP.2 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.338, B:S.338, B:G.339, B:S.340, A:F.268, A:K.271 NA.3: 6 residues within 4Å: Chain A: S.338, G.339, S.340 Chain B: G.267, D.363 Ligands: ANP.4 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.338, A:S.338, A:G.339, A:S.340, B:F.268, B:K.271

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 19 residues within 4Å: Chain A: P.217, M.227, A.230, V.231, G.267, F.268, H.269, G.270, K.271, S.272, T.273, D.361, D.363, V.408, Y.428 Chain B: D.336, S.338, G.339 Ligands: NA.1 21 PLIP interactions: 5 interactions with chain B, 16 interactions with chain A Hydrogen bonds: B:D.336, B:D.336, B:S.338, B:S.338, B:G.339, A:V.231, A:V.231, A:F.268, A:H.269, A:G.270, A:K.271, A:K.271, A:K.271, A:S.272, A:S.272, A:S.272, A:T.273, A:D.363, A:D.363 pi-Stacking: A:Y.428, A:Y.428 ANP.4: 19 residues within 4Å: Chain A: D.336, S.338, G.339 Chain B: P.217, M.227, A.230, V.231, G.267, F.268, H.269, G.270, K.271, S.272, T.273, D.361, D.363, V.408, Y.428 Ligands: NA.3 26 PLIP interactions: 19 interactions with chain B, 7 interactions with chain A Hydrogen bonds: B:V.231, B:V.231, B:F.268, B:H.269, B:G.270, B:K.271, B:K.271, B:K.271, B:S.272, B:S.272, B:S.272, B:T.273, B:T.273, B:D.363, B:D.363, B:D.363, B:Y.428, A:T.334, A:D.336, A:D.336, A:D.336, A:S.338, A:S.338, A:G.339 pi-Stacking: B:Y.428, B:Y.428

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 2.7 Angstrom Crystal Structure of ABC transporter ATPase from Vibrio vulnificus in Complex with Adenylyl-imidodiphosphate (AMP-PNP). To Be Published

Release Date

2015-08-26

Peptides

Predicted ATPase of the ABC class: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Predicted ATPase of the ABC class