SMTL ID : 5d7h.1 (1 other biounit)

X-RAY CRYSTAL STRUCTURE OF L,D TRANSPEPTIDASE 2 FROM MYCOBACTERIUM TUBERCULOSIS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.49, S.51, P.52 Ligands: SO4.5 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.56 Salt bridges: A:R.49 SO4.2: 3 residues within 4Å: Chain A: D.177, G.179, E.180 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.177, A:E.180 Water bridges: A:G.181 SO4.3: 3 residues within 4Å: Chain A: R.44, E.61, R.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.61 Salt bridges: A:R.44, A:R.67 SO4.4: 2 residues within 4Å: Chain A: R.242, R.316 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.242 Salt bridges: A:R.242, A:R.316 SO4.5: 3 residues within 4Å: Chain A: S.51, R.56 Ligands: SO4.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.49, A:S.51 Salt bridges: A:R.56 SO4.9: 1 residues within 4Å: Chain A: H.245 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.245

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: M.248, H.281, W.285, T.295, S.296, H.297, G.298, C.299, N.301 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.299, A:N.301, A:N.301 GOL.7: 4 residues within 4Å: Chain A: N.122, N.149, N.150, R.151 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.122, A:N.150, A:N.150 GOL.8: 1 residues within 4Å: Chain A: R.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.151, A:R.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bianchet, M.A. et al., Structural insight into the inactivation of Mycobacterium tuberculosis non-classical transpeptidase LdtMt2 by biapenem and tebipenem. BMC Biochem. (2017)

Release Date

2016-09-28

Peptides

L,D-transpeptidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L,D-transpeptidase 2

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