SMTL ID : 5d7w.1

Crystal structure of serralysin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.174, E.175, H.178, H.184, Y.214 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.174, A:H.178, A:H.184, A:Y.214, H2O.2

7 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: R.251, G.253, T.255, D.283, G.285, D.288 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:R.251, A:G.253, A:T.255, A:G.285, A:D.288 CA.3: 4 residues within 4Å: Chain A: G.286, D.288, T.325, E.327 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.286, A:D.288, A:T.325, A:E.327, H2O.10 CA.4: 7 residues within 4Å: Chain A: G.332, G.334, D.336, G.349, G.350, A.351, D.354 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:G.332, A:G.334, A:D.336, A:G.349, A:A.351, A:D.354 CA.5: 7 residues within 4Å: Chain A: N.341, A.343, N.345, G.358, G.359, G.360, D.363 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.341, A:A.343, A:G.358, A:G.360, A:D.363 CA.6: 8 residues within 4Å: Chain A: G.350, A.351, G.352, D.354, G.367, G.368, A.369, D.372 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.350, A:G.352, A:D.354, A:G.367, A:D.372 CA.7: 5 residues within 4Å: Chain A: G.368, A.369, G.370, D.372, D.398 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.368, A:D.372, A:D.398, H2O.9, H2O.14 CA.8: 6 residues within 4Å: Chain A: G.359, G.360, G.361, D.363, D.381, D.388 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.361, A:D.363, A:D.381, A:D.388, H2O.1

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 7 residues within 4Å: Chain A: D.166, H.227, Y.228, A.229, A.230, K.276, I.278 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.228, A:A.230, A:K.276 Water bridges: A:H.227, A:A.231, A:K.276, A:I.278, A:I.278 GOL.10: 5 residues within 4Å: Chain A: T.2, Y.4, D.5, S.403, K.407 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.2, A:T.2, A:S.403 Water bridges: A:K.407

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, D. et al., Structure of a thermostable serralysin from Serratia sp. FS14 at 1.1 angstrom resolution. Acta Crystallogr.,Sect.F (2016)

Release Date

2016-01-13

Peptides

Serralysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serralysin