SMTL ID : 5d7z.1

Crystal structure of glyoxalase I from Zea mays

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 2 residues within 4Å: Chain A: H.290, H.295 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.290, A:H.295

5 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: R.120, V.125, I.132 Ligands: 2PE.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.120, A:K.126 FMT.3: 5 residues within 4Å: Chain A: M.159, R.161, T.210, N.212 Ligands: 2PE.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.161, A:N.212 FMT.4: 4 residues within 4Å: Chain A: R.182, K.184, I.193, M.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.182, A:R.182, A:K.184, A:K.184 FMT.5: 3 residues within 4Å: Chain A: T.130, I.146, R.148 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.148 FMT.6: 3 residues within 4Å: Chain A: R.254, S.268, K.276 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.268, A:S.268, A:K.276

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 1 residues within 4Å: Ligands: 2PE.8 No protein-ligand interaction detected (PLIP)

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.8: 11 residues within 4Å: Chain A: H.96, V.125, I.132, F.134, M.142, E.144, Y.191, T.210 Ligands: FMT.2, FMT.3, NA.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Turra, G.L. et al., Structure of the novel monomeric glyoxalase I from Zea mays. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-09-09

Peptides

Lactoylglutathione lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lactoylglutathione lyase