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SMTL ID : 5d84.1
Staphyloferrin B precursor biosynthetic enzyme SbnA bound to PLP
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.45 Å
Oligo State
homo-dimer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Covalent)
PLP.1:
15 residues within 4Å:
Chain A:
M.46
,
K.47
,
N.77
,
P.183
,
V.184
,
S.185
,
T.186
,
T.187
,
G.188
,
S.189
,
G.228
,
S.272
,
P.298
,
D.299
,
Y.304
17
PLIP interactions
:
17 interactions with chain A
Hydrophobic interactions:
A:K.47
,
A:P.298
Hydrogen bonds:
A:N.77
,
A:P.183
,
A:S.185
,
A:T.186
,
A:T.187
,
A:G.188
,
A:S.189
,
A:S.189
,
A:S.272
Water bridges:
A:N.77
,
A:N.157
,
A:N.157
,
A:S.185
,
A:I.190
Salt bridges:
A:K.47
PLP.3:
15 residues within 4Å:
Chain B:
M.46
,
K.47
,
N.77
,
P.183
,
V.184
,
S.185
,
T.186
,
T.187
,
G.188
,
S.189
,
G.228
,
S.272
,
P.298
,
D.299
,
Y.304
17
PLIP interactions
:
17 interactions with chain B
Hydrophobic interactions:
B:K.47
,
B:P.298
Hydrogen bonds:
B:N.77
,
B:P.183
,
B:S.185
,
B:T.186
,
B:T.187
,
B:G.188
,
B:S.189
,
B:S.189
,
B:S.272
Water bridges:
B:N.77
,
B:N.157
,
B:N.157
,
B:S.185
,
B:I.190
Salt bridges:
B:K.47
2 x
MG
:
MAGNESIUM ION
(Non-functional Binders)
MG.2:
0 residues within 4Å:
(No contacts)
No protein-ligand interaction detected (PLIP)
MG.4:
0 residues within 4Å:
(No contacts)
No protein-ligand interaction detected (PLIP)
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Kobylarz, M.J. et al., Deciphering the Substrate Specificity of SbnA, the Enzyme Catalyzing the First Step in Staphyloferrin B Biosynthesis. Biochemistry (2016)
Release Date
2016-02-03
Peptides
Probable siderophore biosynthesis protein SbnA:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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Probable siderophore biosynthesis protein SbnA
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5d85.1
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