SMTL ID : 5d88.1

The Structure of the U32 Peptidase Mk0906

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: C.88, G.90, H.209 Chain B: C.88, G.90, H.209 Ligands: ZN.3 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.88, A:H.209, B:C.88, B:H.209 ZN.3: 7 residues within 4Å: Chain A: C.88, G.90, H.209 Chain B: C.88, G.90, H.209 Ligands: ZN.1 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.88, A:H.209, B:C.88, B:H.209

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 9 residues within 4Å: Chain A: T.55, L.56, L.57, H.141, G.191, A.192, I.193, R.204, L.248 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.193, A:L.248 Hydrogen bonds: A:L.56, A:I.193 Salt bridges: A:H.141, A:R.204 ACT.4: 9 residues within 4Å: Chain B: T.55, L.56, L.57, H.141, G.191, A.192, I.193, R.204, L.248 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.193, B:L.248 Hydrogen bonds: B:L.56, B:I.193 Salt bridges: B:H.141, B:R.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schacherl, M. et al., The first crystal structure of the peptidase domain of the U32 peptidase family. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-12-02

Peptides

Predicted protease of the collagenase family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Predicted protease of the collagenase family