SMTL ID : 5d8y.1

2.05A resolution structure of iron bound BfrB (L68A E81A) from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-24-mer

Ligands

144 x FE2: FE (II) ION(Non-covalent)

FE2.1: 2 residues within 4Å: Chain A: H.153 Chain F: H.155 6 PLIP interactions: 1 interactions with chain F, 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: F:H.155, A:H.153, H2O.2, H2O.3, H2O.5, H2O.29 FE2.2: 2 residues within 4Å: Chain A: H.155 Chain Q: H.153 6 PLIP interactions: 1 interactions with chain A, 1 interactions with chain Q, 4 Ligand-Water interactions Metal complexes: A:H.155, Q:H.153, H2O.6, H2O.78, H2O.80, H2O.81 FE2.3: 6 residues within 4Å: Chain A: E.18, E.51, H.54, E.127 Ligands: FE2.5, ACT.9 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.18, A:E.18, A:E.51, A:H.54, A:E.127 FE2.4: 2 residues within 4Å: Chain A: H.10, H.107 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.10, A:H.107, H2O.2, H2O.5, H2O.5, H2O.5 FE2.5: 6 residues within 4Å: Chain A: E.51, E.94, E.127, H.130 Ligands: FE2.3, ACT.9 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.51, A:E.94, A:E.94, A:E.127, A:H.130 FE2.6: 2 residues within 4Å: Chain B: D.34 Chain J: D.132 No protein-ligand interaction detected (PLIP) FE2.7: 1 residues within 4Å: Chain F: D.34 No protein-ligand interaction detected (PLIP) FE2.8: 3 residues within 4Å: Chain A: D.118, D.122 Chain J: E.125 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.118 FE2.11: 2 residues within 4Å: Chain B: H.153 Chain C: H.155 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: C:H.155, B:H.153, H2O.8, H2O.9, H2O.10, H2O.15 FE2.12: 2 residues within 4Å: Chain B: H.155 Chain J: H.153 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain J, 3 Ligand-Water interactions Metal complexes: B:H.155, J:H.153, H2O.11, H2O.46, H2O.47 FE2.13: 6 residues within 4Å: Chain B: E.18, E.51, H.54, E.127 Ligands: FE2.14, ACT.19 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.18, B:E.51, B:H.54, B:E.127, B:E.127 FE2.14: 6 residues within 4Å: Chain B: E.51, E.94, E.127, H.130 Ligands: FE2.13, ACT.19 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.51, B:E.94, B:E.94, B:E.127, B:H.130 FE2.15: 2 residues within 4Å: Chain B: H.10, H.107 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.10, B:H.107, H2O.9, H2O.11, H2O.11 FE2.16: 2 residues within 4Å: Chain A: D.34 Chain Q: D.132 No protein-ligand interaction detected (PLIP) FE2.17: 2 residues within 4Å: Chain B: D.118, D.122 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.118, B:D.122, H2O.7, H2O.78 FE2.21: 6 residues within 4Å: Chain C: E.18, E.51, H.54, E.127 Ligands: FE2.24, ACT.27 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.18, C:E.18, C:E.51, C:H.54, C:E.127 FE2.22: 2 residues within 4Å: Chain C: H.153 Chain W: H.155 6 PLIP interactions: 1 interactions with chain W, 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: W:H.155, C:H.153, H2O.13, H2O.13, H2O.15, H2O.110 FE2.23: 2 residues within 4Å: Chain C: H.10, H.107 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.10, C:H.107, H2O.14, H2O.15 FE2.24: 6 residues within 4Å: Chain C: E.51, E.94, E.127, H.130 Ligands: FE2.21, ACT.27 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.51, C:E.94, C:E.94, C:E.127, C:H.130 FE2.25: 2 residues within 4Å: Chain D: D.34 Chain T: D.132 No protein-ligand interaction detected (PLIP) FE2.26: 3 residues within 4Å: Chain C: D.118, D.122 Chain T: K.121 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.118, H2O.12, H2O.12 FE2.28: 2 residues within 4Å: Chain D: H.155 Chain T: H.153 6 PLIP interactions: 1 interactions with chain T, 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: T:H.153, D:H.155, H2O.20, H2O.94, H2O.95, H2O.96 FE2.29: 2 residues within 4Å: Chain D: H.153 Chain R: H.155 6 PLIP interactions: 1 interactions with chain D, 1 interactions with chain R, 4 Ligand-Water interactions Metal complexes: D:H.153, R:H.155, H2O.19, H2O.19, H2O.20, H2O.86 FE2.30: 6 residues within 4Å: Chain D: E.18, E.51, H.54, E.127 Ligands: FE2.31, ACT.36 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.18, D:E.18, D:E.51, D:H.54, D:E.127 FE2.31: 6 residues within 4Å: Chain D: E.51, E.94, E.127, H.130 Ligands: FE2.30, ACT.36 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.51, D:E.94, D:E.94, D:E.127, D:H.130 FE2.32: 2 residues within 4Å: Chain D: H.10, H.107 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.10, D:H.107, H2O.19, H2O.20 FE2.33: 1 residues within 4Å: Chain C: D.34 No protein-ligand interaction detected (PLIP) FE2.34: 3 residues within 4Å: Chain D: D.118, K.121, D.122 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.122, H2O.16 FE2.38: 6 residues within 4Å: Chain E: E.18, E.51, H.54, E.127 Ligands: FE2.42, ACT.46 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.18, E:E.18, E:E.51, E:E.127, E:E.127 FE2.39: 2 residues within 4Å: Chain E: H.155 Chain O: H.153 6 PLIP interactions: 1 interactions with chain O, 1 interactions with chain E, 4 Ligand-Water interactions Metal complexes: O:H.153, E:H.155, H2O.25, H2O.71, H2O.71, H2O.72 FE2.40: 2 residues within 4Å: Chain E: H.153 Chain I: H.155 6 PLIP interactions: 1 interactions with chain E, 1 interactions with chain I, 4 Ligand-Water interactions Metal complexes: E:H.153, I:H.155, H2O.24, H2O.25, H2O.25, H2O.43 FE2.41: 2 residues within 4Å: Chain E: H.10, H.107 5 PLIP interactions: 2 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:H.10, E:H.107, H2O.24, H2O.24, H2O.25 FE2.42: 6 residues within 4Å: Chain E: E.51, E.94, E.127, H.130 Ligands: FE2.38, ACT.46 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.51, E:E.94, E:E.94, E:E.127, E:H.130 FE2.43: 2 residues within 4Å: Chain E: D.34 Chain O: D.132 No protein-ligand interaction detected (PLIP) FE2.44: 2 residues within 4Å: Chain E: D.118, D.122 3 PLIP interactions: 1 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.118, H2O.1, H2O.21 FE2.48: 6 residues within 4Å: Chain F: E.18, E.51, H.54, E.127 Ligands: FE2.50, ACT.53 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:E.18, F:E.18, F:E.51, F:H.54, F:E.127 FE2.49: 2 residues within 4Å: Chain F: H.153 Chain H: H.155 6 PLIP interactions: 1 interactions with chain H, 1 interactions with chain F, 4 Ligand-Water interactions Metal complexes: H:H.155, F:H.153, H2O.28, H2O.28, H2O.29, H2O.38 FE2.50: 6 residues within 4Å: Chain F: E.51, E.94, E.127, H.130 Ligands: FE2.48, ACT.53 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:E.51, F:E.94, F:E.94, F:E.127, F:H.130 FE2.51: 2 residues within 4Å: Chain F: H.10, H.107 6 PLIP interactions: 2 interactions with chain F, 4 Ligand-Water interactions Metal complexes: F:H.10, F:H.107, H2O.28, H2O.29, H2O.29, H2O.29 FE2.52: 3 residues within 4Å: Chain F: D.118, D.122 Chain O: E.125 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.118, F:D.122 FE2.54: 6 residues within 4Å: Chain G: E.18, E.51, H.54, E.127 Ligands: FE2.57, ACT.62 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.18, G:E.18, G:E.51, G:H.54, G:E.127 FE2.55: 2 residues within 4Å: Chain G: H.155 Chain V: H.153 6 PLIP interactions: 1 interactions with chain V, 1 interactions with chain G, 4 Ligand-Water interactions Metal complexes: V:H.153, G:H.155, H2O.34, H2O.104, H2O.105, H2O.105 FE2.56: 2 residues within 4Å: Chain G: H.153 Chain P: H.155 6 PLIP interactions: 1 interactions with chain P, 1 interactions with chain G, 4 Ligand-Water interactions Metal complexes: P:H.155, G:H.153, H2O.30, H2O.33, H2O.34, H2O.76 FE2.57: 6 residues within 4Å: Chain G: E.51, E.94, E.127, H.130 Ligands: FE2.54, ACT.62 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.51, G:E.94, G:E.94, G:E.127, G:H.130 FE2.58: 2 residues within 4Å: Chain G: H.10, H.107 4 PLIP interactions: 2 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:H.10, G:H.107, H2O.33, H2O.34 FE2.59: 2 residues within 4Å: Chain G: D.34 Chain V: D.132 No protein-ligand interaction detected (PLIP) FE2.60: 2 residues within 4Å: Chain G: D.118, D.122 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:D.118, G:D.122 FE2.64: 2 residues within 4Å: Chain H: H.153 Chain Q: H.155 6 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain H, 4 Ligand-Water interactions Metal complexes: Q:H.155, H:H.153, H2O.36, H2O.36, H2O.38, H2O.81 FE2.65: 6 residues within 4Å: Chain H: E.18, E.51, H.54, E.127 Ligands: FE2.66, ACT.70 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:E.18, H:E.18, H:E.51, H:H.54, H:E.127 FE2.66: 6 residues within 4Å: Chain H: E.51, E.94, E.127, H.130 Ligands: FE2.65, ACT.70 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:E.51, H:E.94, H:E.94, H:E.127, H:H.130 FE2.67: 2 residues within 4Å: Chain H: H.10, H.107 4 PLIP interactions: 2 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:H.10, H:H.107, H2O.37, H2O.38 FE2.68: 2 residues within 4Å: Chain F: D.132 Chain H: D.34 No protein-ligand interaction detected (PLIP) FE2.69: 3 residues within 4Å: Chain H: D.118, D.122 Chain V: E.125 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:D.118, H:D.122 FE2.71: 6 residues within 4Å: Chain I: E.18, E.51, H.54, E.127 Ligands: FE2.73, ACT.78 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:E.18, I:E.18, I:E.51, I:E.127, I:E.127 FE2.72: 2 residues within 4Å: Chain I: H.153 Chain K: H.155 6 PLIP interactions: 1 interactions with chain K, 1 interactions with chain I, 4 Ligand-Water interactions Metal complexes: K:H.155, I:H.153, H2O.39, H2O.41, H2O.42, H2O.52 FE2.73: 6 residues within 4Å: Chain I: E.51, E.94, E.127, H.130 Ligands: FE2.71, ACT.78 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:E.51, I:E.94, I:E.94, I:E.127, I:H.130 FE2.74: 2 residues within 4Å: Chain I: H.10, H.107 5 PLIP interactions: 2 interactions with chain I, 3 Ligand-Water interactions Metal complexes: I:H.10, I:H.107, H2O.41, H2O.42, H2O.43 FE2.75: 1 residues within 4Å: Chain J: D.34 No protein-ligand interaction detected (PLIP) FE2.76: 4 residues within 4Å: Chain I: D.118, D.122 Chain W: K.121, E.125 2 PLIP interactions: 1 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:D.118, H2O.39 FE2.79: 2 residues within 4Å: Chain J: H.155 Chain W: H.153 6 PLIP interactions: 1 interactions with chain J, 1 interactions with chain W, 4 Ligand-Water interactions Metal complexes: J:H.155, W:H.153, H2O.47, H2O.107, H2O.108, H2O.110 FE2.80: 6 residues within 4Å: Chain J: E.18, E.51, H.54, E.127 Ligands: FE2.81, ACT.85 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:E.18, J:E.18, J:E.51, J:H.54, J:E.127 FE2.81: 6 residues within 4Å: Chain J: E.51, E.94, E.127, H.130 Ligands: FE2.80, ACT.85 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:E.51, J:E.94, J:E.94, J:E.127, J:H.130 FE2.82: 2 residues within 4Å: Chain J: H.10, H.107 5 PLIP interactions: 2 interactions with chain J, 3 Ligand-Water interactions Metal complexes: J:H.10, J:H.107, H2O.46, H2O.47, H2O.47 FE2.83: 2 residues within 4Å: Chain E: D.132 Chain I: D.34 No protein-ligand interaction detected (PLIP) FE2.84: 3 residues within 4Å: Chain J: D.118, K.121, D.122 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:D.118, J:D.122, J:D.122 FE2.86: 6 residues within 4Å: Chain K: E.18, E.51, H.54, E.127 Ligands: FE2.89, ACT.93 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:E.18, K:E.18, K:E.51, K:H.54, K:E.127 FE2.87: 2 residues within 4Å: Chain K: H.153 Chain O: H.155 6 PLIP interactions: 1 interactions with chain K, 1 interactions with chain O, 4 Ligand-Water interactions Metal complexes: K:H.153, O:H.155, H2O.49, H2O.51, H2O.52, H2O.72 FE2.88: 2 residues within 4Å: Chain K: H.10, H.107 5 PLIP interactions: 2 interactions with chain K, 3 Ligand-Water interactions Metal complexes: K:H.10, K:H.107, H2O.50, H2O.51, H2O.51 FE2.89: 6 residues within 4Å: Chain K: E.51, E.94, E.127, H.130 Ligands: FE2.86, ACT.93 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:E.51, K:E.94, K:E.94, K:E.127, K:H.130 FE2.90: 1 residues within 4Å: Chain L: D.34 No protein-ligand interaction detected (PLIP) FE2.91: 3 residues within 4Å: Chain K: D.118, D.122 Chain N: E.125 1 PLIP interactions: 1 interactions with chain K Metal complexes: K:D.118 FE2.94: 2 residues within 4Å: Chain L: H.153 Chain X: H.155 6 PLIP interactions: 1 interactions with chain L, 1 interactions with chain X, 4 Ligand-Water interactions Metal complexes: L:H.153, X:H.155, H2O.54, H2O.54, H2O.56, H2O.115 FE2.95: 2 residues within 4Å: Chain L: H.155 Chain N: H.153 6 PLIP interactions: 1 interactions with chain L, 1 interactions with chain N, 4 Ligand-Water interactions Metal complexes: L:H.155, N:H.153, H2O.56, H2O.65, H2O.66, H2O.67 FE2.96: 6 residues within 4Å: Chain L: E.18, E.51, H.54, E.127 Ligands: FE2.98, ACT.102 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:E.18, L:E.18, L:E.51, L:H.54, L:E.127 FE2.97: 2 residues within 4Å: Chain L: H.10, H.107 4 PLIP interactions: 1 interactions with chain L, 3 Ligand-Water interactions Metal complexes: L:H.10, H2O.56, H2O.56, H2O.56 FE2.98: 6 residues within 4Å: Chain L: E.51, E.94, E.127, H.130 Ligands: FE2.96, ACT.102 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:E.51, L:E.94, L:E.94, L:E.127, L:H.130 FE2.99: 2 residues within 4Å: Chain I: D.132 Chain K: D.34 No protein-ligand interaction detected (PLIP) FE2.100: 2 residues within 4Å: Chain L: D.132 Chain X: D.34 No protein-ligand interaction detected (PLIP) FE2.101: 2 residues within 4Å: Chain L: D.118, D.122 3 PLIP interactions: 2 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:D.118, L:D.122, H2O.40 FE2.104: 2 residues within 4Å: Chain M: H.153 Chain V: H.155 6 PLIP interactions: 1 interactions with chain M, 1 interactions with chain V, 4 Ligand-Water interactions Metal complexes: M:H.153, V:H.155, H2O.58, H2O.60, H2O.61, H2O.103 FE2.105: 2 residues within 4Å: Chain M: H.155 Chain P: H.153 6 PLIP interactions: 1 interactions with chain P, 1 interactions with chain M, 4 Ligand-Water interactions Metal complexes: P:H.153, M:H.155, H2O.61, H2O.75, H2O.75, H2O.76 FE2.106: 6 residues within 4Å: Chain M: E.18, E.51, H.54, E.127 Ligands: FE2.108, ACT.112 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:E.18, M:E.18, M:E.51, M:H.54, M:E.127 FE2.107: 2 residues within 4Å: Chain M: H.10, H.107 6 PLIP interactions: 2 interactions with chain M, 4 Ligand-Water interactions Metal complexes: M:H.10, M:H.107, H2O.60, H2O.61, H2O.61, H2O.61 FE2.108: 6 residues within 4Å: Chain M: E.51, E.94, E.127, H.130 Ligands: FE2.106, ACT.112 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:E.51, M:E.94, M:E.94, M:E.127, M:H.130 FE2.109: 1 residues within 4Å: Chain N: D.34 No protein-ligand interaction detected (PLIP) FE2.110: 2 residues within 4Å: Chain M: D.118, D.122 4 PLIP interactions: 2 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:D.118, M:D.122, H2O.58, H2O.87 FE2.113: 2 residues within 4Å: Chain N: H.10, H.107 4 PLIP interactions: 2 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:H.10, N:H.107, H2O.64, H2O.67 FE2.114: 2 residues within 4Å: Chain N: H.155 Chain S: H.153 6 PLIP interactions: 1 interactions with chain N, 1 interactions with chain S, 4 Ligand-Water interactions Metal complexes: N:H.155, S:H.153, H2O.67, H2O.88, H2O.89, H2O.91 FE2.115: 6 residues within 4Å: Chain N: E.18, E.51, H.54, E.127 Ligands: FE2.116, ACT.119 5 PLIP interactions: 5 interactions with chain N Metal complexes: N:E.18, N:E.18, N:E.51, N:E.127, N:E.127 FE2.116: 6 residues within 4Å: Chain N: E.51, E.94, E.127, H.130 Ligands: FE2.115, ACT.119 5 PLIP interactions: 5 interactions with chain N Metal complexes: N:E.51, N:E.94, N:E.94, N:E.127, N:H.130 FE2.117: 2 residues within 4Å: Chain M: D.34 Chain P: E.135 No protein-ligand interaction detected (PLIP) FE2.118: 3 residues within 4Å: Chain N: D.118, D.122 Chain P: E.125 2 PLIP interactions: 2 interactions with chain N Metal complexes: N:D.118, N:D.122 FE2.120: 6 residues within 4Å: Chain O: E.18, E.51, H.54, E.127 Ligands: FE2.121, ACT.124 5 PLIP interactions: 5 interactions with chain O Metal complexes: O:E.18, O:E.18, O:E.51, O:H.54, O:E.127 FE2.121: 6 residues within 4Å: Chain O: E.51, E.94, E.127, H.130 Ligands: FE2.120, ACT.124 5 PLIP interactions: 5 interactions with chain O Metal complexes: O:E.51, O:E.94, O:E.94, O:E.127, O:H.130 FE2.122: 2 residues within 4Å: Chain O: H.10, H.107 6 PLIP interactions: 2 interactions with chain O, 4 Ligand-Water interactions Metal complexes: O:H.10, O:H.107, H2O.71, H2O.72, H2O.72, H2O.72 FE2.123: 2 residues within 4Å: Chain O: D.118, D.122 4 PLIP interactions: 2 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:D.118, O:D.122, H2O.68, H2O.68 FE2.125: 6 residues within 4Å: Chain P: E.18, E.51, H.54, E.127 Ligands: FE2.126, ACT.132 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:E.18, P:E.51, P:H.54, P:E.127, P:E.127 FE2.126: 6 residues within 4Å: Chain P: E.51, E.94, E.127, H.130 Ligands: FE2.125, ACT.132 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:E.51, P:E.94, P:E.94, P:E.127, P:H.130 FE2.127: 2 residues within 4Å: Chain P: H.10, H.107 4 PLIP interactions: 2 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:H.10, P:H.107, H2O.75, H2O.76 FE2.128: 2 residues within 4Å: Chain K: D.132 Chain O: D.34 No protein-ligand interaction detected (PLIP) FE2.129: 1 residues within 4Å: Chain P: D.34 No protein-ligand interaction detected (PLIP) FE2.130: 2 residues within 4Å: Chain P: D.118, D.122 2 PLIP interactions: 2 interactions with chain P Metal complexes: P:D.118, P:D.122 FE2.133: 6 residues within 4Å: Chain Q: E.18, E.51, H.54, E.127 Ligands: FE2.134, ACT.137 5 PLIP interactions: 5 interactions with chain Q Metal complexes: Q:E.18, Q:E.51, Q:H.54, Q:E.127, Q:E.127 FE2.134: 6 residues within 4Å: Chain Q: E.51, E.94, E.127, H.130 Ligands: FE2.133, ACT.137 5 PLIP interactions: 5 interactions with chain Q Metal complexes: Q:E.51, Q:E.94, Q:E.94, Q:E.127, Q:H.130 FE2.135: 2 residues within 4Å: Chain Q: H.10, H.107 6 PLIP interactions: 2 interactions with chain Q, 4 Ligand-Water interactions Metal complexes: Q:H.10, Q:H.107, H2O.79, H2O.81, H2O.81, H2O.81 FE2.136: 3 residues within 4Å: Chain Q: D.118, K.121, D.122 2 PLIP interactions: 2 interactions with chain Q Metal complexes: Q:D.122, Q:D.122 FE2.138: 2 residues within 4Å: Chain R: H.153 Chain U: H.155 6 PLIP interactions: 1 interactions with chain R, 1 interactions with chain U, 4 Ligand-Water interactions Metal complexes: R:H.153, U:H.155, H2O.84, H2O.86, H2O.86, H2O.101 FE2.139: 6 residues within 4Å: Chain R: E.18, E.51, H.54, E.127 Ligands: FE2.141, ACT.146 5 PLIP interactions: 5 interactions with chain R Metal complexes: R:E.18, R:E.18, R:E.51, R:H.54, R:E.127 FE2.140: 2 residues within 4Å: Chain R: H.10, H.107 3 PLIP interactions: 1 interactions with chain R, 2 Ligand-Water interactions Metal complexes: R:H.10, H2O.84, H2O.86 FE2.141: 6 residues within 4Å: Chain R: E.51, E.94, E.127, H.130 Ligands: FE2.139, ACT.146 5 PLIP interactions: 5 interactions with chain R Metal complexes: R:E.51, R:E.94, R:E.94, R:E.127, R:H.130 FE2.142: 2 residues within 4Å: Chain H: D.132 Chain Q: D.34 No protein-ligand interaction detected (PLIP) FE2.143: 1 residues within 4Å: Chain R: D.34 No protein-ligand interaction detected (PLIP) FE2.144: 3 residues within 4Å: Chain H: E.125 Chain R: D.118, D.122 2 PLIP interactions: 2 interactions with chain R Metal complexes: R:D.118, R:D.122 FE2.147: 6 residues within 4Å: Chain S: E.18, E.51, H.54, E.127 Ligands: FE2.150, ACT.153 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:E.18, S:E.18, S:E.51, S:H.54, S:E.127 FE2.148: 2 residues within 4Å: Chain S: H.155 Chain X: H.153 6 PLIP interactions: 1 interactions with chain X, 1 interactions with chain S, 4 Ligand-Water interactions Metal complexes: X:H.153, S:H.155, H2O.91, H2O.112, H2O.114, H2O.114 FE2.149: 2 residues within 4Å: Chain S: H.10, H.107 5 PLIP interactions: 2 interactions with chain S, 3 Ligand-Water interactions Metal complexes: S:H.10, S:H.107, H2O.89, H2O.91, H2O.91 FE2.150: 6 residues within 4Å: Chain S: E.51, E.94, E.127, H.130 Ligands: FE2.147, ACT.153 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:E.51, S:E.94, S:E.94, S:E.127, S:H.130 FE2.151: 2 residues within 4Å: Chain S: D.118, D.122 2 PLIP interactions: 2 interactions with chain S Metal complexes: S:D.118, S:D.122 FE2.154: 2 residues within 4Å: Chain T: H.155 Chain U: H.153 6 PLIP interactions: 1 interactions with chain U, 1 interactions with chain T, 4 Ligand-Water interactions Metal complexes: U:H.153, T:H.155, H2O.96, H2O.98, H2O.101, H2O.101 FE2.155: 6 residues within 4Å: Chain T: E.18, E.51, H.54, E.127 Ligands: FE2.157, ACT.160 5 PLIP interactions: 5 interactions with chain T Metal complexes: T:E.18, T:E.51, T:H.54, T:E.127, T:E.127 FE2.156: 2 residues within 4Å: Chain T: H.10, H.107 6 PLIP interactions: 2 interactions with chain T, 4 Ligand-Water interactions Metal complexes: T:H.10, T:H.107, H2O.94, H2O.96, H2O.96, H2O.96 FE2.157: 6 residues within 4Å: Chain T: E.51, E.94, E.127, H.130 Ligands: FE2.155, ACT.160 5 PLIP interactions: 5 interactions with chain T Metal complexes: T:E.51, T:E.94, T:E.94, T:E.127, T:H.130 FE2.158: 2 residues within 4Å: Chain S: D.34 Chain X: D.132 No protein-ligand interaction detected (PLIP) FE2.159: 3 residues within 4Å: Chain T: D.118, D.122 Chain X: E.125 2 PLIP interactions: 2 interactions with chain T Metal complexes: T:D.118, T:D.122 FE2.161: 6 residues within 4Å: Chain U: E.18, E.51, H.54, E.127 Ligands: FE2.162, ACT.168 5 PLIP interactions: 5 interactions with chain U Metal complexes: U:E.18, U:E.18, U:E.51, U:E.127, U:E.127 FE2.162: 6 residues within 4Å: Chain U: E.51, E.94, E.127, H.130 Ligands: FE2.161, ACT.168 5 PLIP interactions: 5 interactions with chain U Metal complexes: U:E.51, U:E.94, U:E.94, U:E.127, U:H.130 FE2.163: 2 residues within 4Å: Chain U: H.10, H.107 6 PLIP interactions: 2 interactions with chain U, 4 Ligand-Water interactions Metal complexes: U:H.10, U:H.107, H2O.100, H2O.101, H2O.101, H2O.101 FE2.164: 2 residues within 4Å: Chain T: D.34 Chain U: D.132 No protein-ligand interaction detected (PLIP) FE2.165: 1 residues within 4Å: Chain V: D.34 No protein-ligand interaction detected (PLIP) FE2.166: 3 residues within 4Å: Chain U: D.118, K.121, D.122 4 PLIP interactions: 3 interactions with chain U, 1 Ligand-Water interactions Metal complexes: U:D.118, U:D.122, U:D.122, H2O.98 FE2.169: 6 residues within 4Å: Chain V: E.18, E.51, H.54, E.127 Ligands: FE2.170, ACT.174 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:E.18, V:E.51, V:H.54, V:E.127, V:E.127 FE2.170: 6 residues within 4Å: Chain V: E.51, E.94, E.127, H.130 Ligands: FE2.169, ACT.174 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:E.51, V:E.94, V:E.94, V:E.127, V:H.130 FE2.171: 2 residues within 4Å: Chain V: H.10, H.107 5 PLIP interactions: 2 interactions with chain V, 3 Ligand-Water interactions Metal complexes: V:H.10, V:H.107, H2O.105, H2O.105, H2O.106 FE2.172: 2 residues within 4Å: Chain R: D.132 Chain U: D.34 No protein-ligand interaction detected (PLIP) FE2.173: 2 residues within 4Å: Chain V: D.118, D.122 3 PLIP interactions: 2 interactions with chain V, 1 Ligand-Water interactions Metal complexes: V:D.118, V:D.122, H2O.103 FE2.175: 6 residues within 4Å: Chain W: E.18, E.51, H.54, E.127 Ligands: FE2.176, ACT.180 5 PLIP interactions: 5 interactions with chain W Metal complexes: W:E.18, W:E.18, W:E.51, W:H.54, W:E.127 FE2.176: 6 residues within 4Å: Chain W: E.51, E.94, E.127, H.130 Ligands: FE2.175, ACT.180 5 PLIP interactions: 5 interactions with chain W Metal complexes: W:E.51, W:E.94, W:E.94, W:E.127, W:H.130 FE2.177: 2 residues within 4Å: Chain W: H.10, H.107 6 PLIP interactions: 2 interactions with chain W, 4 Ligand-Water interactions Metal complexes: W:H.10, W:H.107, H2O.109, H2O.110, H2O.110, H2O.110 FE2.178: 2 residues within 4Å: Chain W: D.118, D.122 2 PLIP interactions: 2 interactions with chain W Metal complexes: W:D.118, W:D.122 FE2.181: 6 residues within 4Å: Chain X: E.18, E.51, H.54, E.127 Ligands: FE2.182, ACT.186 5 PLIP interactions: 5 interactions with chain X Metal complexes: X:E.18, X:E.18, X:E.51, X:H.54, X:E.127 FE2.182: 6 residues within 4Å: Chain X: E.51, E.94, E.127, H.130 Ligands: FE2.181, ACT.186 5 PLIP interactions: 5 interactions with chain X Metal complexes: X:E.51, X:E.94, X:E.94, X:E.127, X:H.130 FE2.183: 2 residues within 4Å: Chain X: H.10, H.107 5 PLIP interactions: 2 interactions with chain X, 3 Ligand-Water interactions Metal complexes: X:H.10, X:H.107, H2O.114, H2O.114, H2O.115 FE2.184: 2 residues within 4Å: Chain C: D.132 Chain W: D.34 No protein-ligand interaction detected (PLIP) FE2.185: 2 residues within 4Å: Chain X: D.118, D.122 2 PLIP interactions: 2 interactions with chain X Metal complexes: X:D.118, X:D.122

24 x ACT: ACETATE ION(Non-functional Binders)

ACT.9: 9 residues within 4Å: Chain A: N.17, E.18, A.21, E.51, E.94, A.97, E.127 Ligands: FE2.3, FE2.5 Ligand excluded by PLIP ACT.19: 9 residues within 4Å: Chain B: N.17, E.18, A.21, E.51, E.94, A.97, E.127 Ligands: FE2.13, FE2.14 Ligand excluded by PLIP ACT.27: 10 residues within 4Å: Chain C: N.17, E.18, A.21, E.51, L.93, E.94, A.97, E.127 Ligands: FE2.21, FE2.24 Ligand excluded by PLIP ACT.36: 9 residues within 4Å: Chain D: N.17, E.18, A.21, E.51, E.94, A.97, E.127 Ligands: FE2.30, FE2.31 Ligand excluded by PLIP ACT.46: 9 residues within 4Å: Chain E: N.17, E.18, A.21, E.51, E.94, A.97, E.127 Ligands: FE2.38, FE2.42 Ligand excluded by PLIP ACT.53: 10 residues within 4Å: Chain F: N.17, E.18, A.21, E.51, L.93, E.94, A.97, E.127 Ligands: FE2.48, FE2.50 Ligand excluded by PLIP ACT.62: 10 residues within 4Å: Chain G: N.17, E.18, A.21, E.51, L.93, E.94, A.97, E.127 Ligands: FE2.54, FE2.57 Ligand excluded by PLIP ACT.70: 9 residues within 4Å: Chain H: N.17, E.18, A.21, E.51, E.94, A.97, E.127 Ligands: FE2.65, FE2.66 Ligand excluded by PLIP ACT.78: 10 residues within 4Å: Chain I: N.17, E.18, A.21, E.51, L.93, E.94, A.97, E.127 Ligands: FE2.71, FE2.73 Ligand excluded by PLIP ACT.85: 11 residues within 4Å: Chain J: N.17, E.18, A.21, Y.25, E.51, L.93, E.94, A.97, E.127 Ligands: FE2.80, FE2.81 Ligand excluded by PLIP ACT.93: 9 residues within 4Å: Chain K: N.17, E.18, A.21, E.51, E.94, A.97, E.127 Ligands: FE2.86, FE2.89 Ligand excluded by PLIP ACT.102: 10 residues within 4Å: Chain L: N.17, E.18, A.21, E.51, L.93, E.94, A.97, E.127 Ligands: FE2.96, FE2.98 Ligand excluded by PLIP ACT.112: 10 residues within 4Å: Chain M: N.17, E.18, A.21, E.51, L.93, E.94, A.97, E.127 Ligands: FE2.106, FE2.108 Ligand excluded by PLIP ACT.119: 10 residues within 4Å: Chain N: N.17, E.18, A.21, E.51, L.93, E.94, A.97, E.127 Ligands: FE2.115, FE2.116 Ligand excluded by PLIP ACT.124: 10 residues within 4Å: Chain O: N.17, E.18, A.21, E.51, L.93, E.94, A.97, E.127 Ligands: FE2.120, FE2.121 Ligand excluded by PLIP ACT.132: 9 residues within 4Å: Chain P: N.17, E.18, A.21, E.51, E.94, A.97, E.127 Ligands: FE2.125, FE2.126 Ligand excluded by PLIP ACT.137: 9 residues within 4Å: Chain Q: N.17, E.18, A.21, E.51, E.94, A.97, E.127 Ligands: FE2.133, FE2.134 Ligand excluded by PLIP ACT.146: 9 residues within 4Å: Chain R: N.17, E.18, A.21, E.51, E.94, A.97, E.127 Ligands: FE2.139, FE2.141 Ligand excluded by PLIP ACT.153: 9 residues within 4Å: Chain S: N.17, E.18, A.21, E.51, E.94, A.97, E.127 Ligands: FE2.147, FE2.150 Ligand excluded by PLIP ACT.160: 9 residues within 4Å: Chain T: N.17, E.18, A.21, E.51, E.94, A.97, E.127 Ligands: FE2.155, FE2.157 Ligand excluded by PLIP ACT.168: 10 residues within 4Å: Chain U: N.17, E.18, A.21, E.51, L.93, E.94, A.97, E.127 Ligands: FE2.161, FE2.162 Ligand excluded by PLIP ACT.174: 10 residues within 4Å: Chain V: N.17, E.18, A.21, E.51, L.93, E.94, A.97, E.127 Ligands: FE2.169, FE2.170 Ligand excluded by PLIP ACT.180: 10 residues within 4Å: Chain W: N.17, E.18, A.21, Y.25, E.51, E.94, A.97, E.127 Ligands: FE2.175, FE2.176 Ligand excluded by PLIP ACT.186: 9 residues within 4Å: Chain X: N.17, E.18, A.21, E.51, E.94, A.97, E.127 Ligands: FE2.181, FE2.182 Ligand excluded by PLIP

6 x K: POTASSIUM ION(Non-covalent)

K.10: 8 residues within 4Å: Chain A: N.148, Q.151 Chain F: N.148, Q.151 Chain H: N.148, Q.151 Chain Q: N.148, Q.151 No protein-ligand interaction detected (PLIP) K.20: 8 residues within 4Å: Chain B: N.148, Q.151 Chain C: N.148, Q.151 Chain J: N.148, Q.151 Chain W: N.148, Q.151 No protein-ligand interaction detected (PLIP) K.37: 8 residues within 4Å: Chain D: N.148, Q.151 Chain R: N.148, Q.151 Chain T: N.148, Q.151 Chain U: N.148, Q.151 No protein-ligand interaction detected (PLIP) K.47: 8 residues within 4Å: Chain E: N.148, Q.151 Chain I: N.148, Q.151 Chain K: N.148, Q.151 Chain O: N.148, Q.151 No protein-ligand interaction detected (PLIP) K.63: 8 residues within 4Å: Chain G: N.148, Q.151 Chain M: N.148, Q.151 Chain P: N.148, Q.151 Chain V: N.148, Q.151 No protein-ligand interaction detected (PLIP) K.103: 8 residues within 4Å: Chain L: N.148, Q.151 Chain N: N.148, Q.151 Chain S: N.148, Q.151 Chain X: N.148, Q.151 No protein-ligand interaction detected (PLIP)

12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.18: 19 residues within 4Å: Chain A: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Chain B: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 21 PLIP interactions: 10 interactions with chain A, 11 interactions with chain B, Hydrophobic interactions: A:L.19, A:F.26, A:F.26, A:Y.45, A:I.49, A:I.49, A:M.52, A:L.71, B:L.19, B:I.22, B:I.22, B:F.26, B:F.26, B:I.49, B:I.49, B:M.52, B:A.55, B:I.59 Water bridges: A:K.53 Salt bridges: A:K.53, B:K.53 HEM.35: 19 residues within 4Å: Chain C: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Chain D: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 19 PLIP interactions: 10 interactions with chain C, 9 interactions with chain D, Hydrophobic interactions: C:L.19, C:I.22, C:I.22, C:F.26, C:F.26, C:F.26, C:I.49, C:M.52, C:L.71, D:L.19, D:I.22, D:F.26, D:F.26, D:I.49, D:M.52, D:A.55, D:I.59 Salt bridges: C:K.53, D:K.53 HEM.45: 19 residues within 4Å: Chain E: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Chain F: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 18 PLIP interactions: 8 interactions with chain E, 10 interactions with chain F, Hydrophobic interactions: E:L.19, E:I.22, E:F.26, E:F.26, E:I.49, E:M.52, E:L.71, F:L.19, F:I.22, F:I.22, F:F.26, F:F.26, F:I.49, F:M.52, F:A.55, F:I.59 Salt bridges: E:K.53, F:K.53 HEM.61: 19 residues within 4Å: Chain G: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Chain H: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 19 PLIP interactions: 10 interactions with chain G, 9 interactions with chain H, Hydrophobic interactions: G:L.19, G:I.22, G:I.22, G:F.26, G:F.26, G:I.49, G:I.49, G:M.52, G:L.71, H:L.19, H:I.22, H:F.26, H:F.26, H:I.49, H:M.52, H:A.55, H:I.59 Salt bridges: G:K.53, H:K.53 HEM.77: 18 residues within 4Å: Chain I: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain J: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 17 PLIP interactions: 7 interactions with chain I, 10 interactions with chain J, Hydrophobic interactions: I:L.19, I:I.22, I:F.26, I:I.49, I:M.52, J:L.19, J:I.22, J:I.22, J:F.26, J:I.49, J:I.49, J:M.52, J:A.55, J:I.59 Water bridges: I:K.53 Salt bridges: I:K.53, J:K.53 HEM.92: 19 residues within 4Å: Chain K: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Chain L: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 21 PLIP interactions: 11 interactions with chain K, 10 interactions with chain L, Hydrophobic interactions: K:L.19, K:I.22, K:I.22, K:F.26, K:F.26, K:F.26, K:I.49, K:I.49, K:M.52, K:L.71, L:L.19, L:I.22, L:F.26, L:F.26, L:I.49, L:I.49, L:M.52, L:A.55, L:I.59 Salt bridges: K:K.53, L:K.53 HEM.111: 19 residues within 4Å: Chain M: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Chain N: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 19 PLIP interactions: 10 interactions with chain N, 9 interactions with chain M, Hydrophobic interactions: N:L.19, N:I.22, N:I.22, N:F.26, N:F.26, N:I.49, N:M.52, N:A.55, N:I.59, M:L.19, M:F.26, M:F.26, M:I.49, M:I.49, M:M.52, M:L.71 Salt bridges: N:K.53, M:K.53 Water bridges: M:K.53 HEM.131: 19 residues within 4Å: Chain O: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Chain P: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 21 PLIP interactions: 11 interactions with chain P, 10 interactions with chain O, Hydrophobic interactions: P:L.19, P:I.22, P:F.26, P:F.26, P:Y.45, P:I.49, P:I.49, P:M.52, P:A.55, P:I.59, O:L.19, O:I.22, O:I.22, O:F.26, O:F.26, O:F.26, O:I.49, O:M.52, O:L.71 Salt bridges: P:K.53, O:K.53 HEM.145: 19 residues within 4Å: Chain Q: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Chain R: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 20 PLIP interactions: 11 interactions with chain R, 9 interactions with chain Q, Hydrophobic interactions: R:L.19, R:I.22, R:I.22, R:F.26, R:F.26, R:I.49, R:I.49, R:M.52, R:A.55, R:I.59, Q:L.19, Q:I.22, Q:F.26, Q:F.26, Q:F.26, Q:I.49, Q:M.52, Q:L.71 Salt bridges: R:K.53, Q:K.53 HEM.152: 19 residues within 4Å: Chain S: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Chain T: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 20 PLIP interactions: 10 interactions with chain S, 10 interactions with chain T, Hydrophobic interactions: S:L.19, S:I.22, S:I.22, S:F.26, S:F.26, S:F.26, S:I.49, S:M.52, S:L.71, T:L.19, T:I.22, T:F.26, T:F.26, T:I.49, T:I.49, T:M.52, T:A.55, T:I.59 Salt bridges: S:K.53, T:K.53 HEM.167: 19 residues within 4Å: Chain U: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71 Chain V: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 18 PLIP interactions: 10 interactions with chain V, 8 interactions with chain U, Hydrophobic interactions: V:L.19, V:I.22, V:I.22, V:F.26, V:F.26, V:I.49, V:M.52, V:A.55, V:I.59, U:L.19, U:F.26, U:F.26, U:Y.45, U:I.49, U:M.52, U:L.71 Salt bridges: V:K.53, U:K.53 HEM.179: 18 residues within 4Å: Chain W: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 Chain X: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59 19 PLIP interactions: 8 interactions with chain W, 11 interactions with chain X, Hydrophobic interactions: W:L.19, W:I.22, W:F.26, W:F.26, W:F.26, W:I.49, W:M.52, X:L.19, X:I.22, X:I.22, X:F.26, X:F.26, X:I.49, X:I.49, X:M.52, X:A.55, X:I.59 Salt bridges: W:K.53, X:K.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Characterization of the Bacterioferritin/Bacterioferritin Associated Ferredoxin Protein-Protein Interaction in Solution and Determination of Binding Energy Hot Spots. Biochemistry (2015)

Release Date

2015-09-23

Peptides

Ferroxidase: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Ferroxidase

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