SMTL ID : 5d9n.2 (1 other biounit)

Crystal structure of PbGH5A, a glycoside hydrolase family 5 member from Prevotella bryantii B14, in complex with the xyloglucan heptasaccharide XXXG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC- BGC- XYS- XYS- XYS: alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose

BGC-BGC-BGC-BGC-XYS-XYS-XYS.1: 15 residues within 4Å: Chain A: E.162, N.168, W.170, D.171, A.211, A.212, A.213, K.214, G.215, H.238, S.239, Y.240, D.241, W.243, I.263 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.286, A:D.171, A:G.215, A:E.216

2 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.3: 1 residues within 4Å: Chain A: T.272 5 PLIP interactions: 5 Ligand-Water interactions Metal complexes: H2O.4, H2O.5, H2O.5, H2O.6, H2O.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McGregor, N. et al., Structure-Function Analysis of a Mixed-linkage beta-Glucanase/Xyloglucanase from the Key Ruminal Bacteroidetes Prevotella bryantii B14. J.Biol.Chem. (2016)

Release Date

2015-11-04

Peptides

B-1,4-endoglucanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B-1,4-endoglucanase

Related Entries With Identical Sequence