SMTL ID : 5dab.1

Crystal structure of FTO-IN115

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

9 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: K.19, Y.20, P.21, K.22, L.275 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: S.251, W.252, A.277 Ligand excluded by PLIP CL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: L.380 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: P.76 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: N.75, Y.173 Ligand excluded by PLIP CL.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: C.223, F.291 Ligand excluded by PLIP CL.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x FE2: FE (II) ION(Non-covalent)

FE2.10: 3 residues within 4Å: Chain A: H.205, H.281 Ligands: AKG.11 No protein-ligand interaction detected (PLIP)

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.11: 12 residues within 4Å: Chain A: R.70, Y.82, N.179, V.202, V.218, Y.269, V.283, R.290, S.292, T.294, R.296 Ligands: FE2.10 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.294 Hydrogen bonds: A:Y.269, A:S.292, A:R.296 Water bridges: A:R.70, A:Y.82, A:H.205, A:D.207 Salt bridges: A:R.70, A:R.290

1 x 58W: N-(5-chloro-2,4-dihydroxyphenyl)-1-phenylcyclobutanecarboxamide(Non-covalent)

58W.12: 12 residues within 4Å: Chain A: I.59, L.64, L.65, T.66, P.67, M.186, L.189, K.190, M.200, A.201, V.202, S.203 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.59, A:L.64, A:L.64, A:T.66, A:P.67 Hydrogen bonds: A:K.190, A:M.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chai, J. et al., Crystal structure of FTO-IN115. To Be Published

Release Date

2016-08-24

Peptides

Alpha-ketoglutarate-dependent dioxygenase FTO: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase FTO